BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 145658	178 (0.930)	9 (0.050)	6/140	NT	5.3%	intergenic (+83/‑113)	noc_1/USA300HOU_RS00655	Nucleoid occlusion protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 145678	165 (0.990)	9 (0.050)	6/140	NT	5.3%	intergenic (+103/‑93)	noc_1/USA300HOU_RS00655	Nucleoid occlusion protein/hypothetical protein

Only 100 of 227 total aligned reads displayed.

TTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGA  >  USA300TCH1516_ALE/145589‑145768

ttGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGa                                                                                           <  2:1630601‑M2/91‑2 (MQ=255)

  gAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAACACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaag                                                                                         <  1:3077558‑M2/91‑4 (MQ=255)

  gAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaag                                                                                         >  1:1846748‑M2/1‑88 (MQ=255)

  gAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaag                                                                                         >  2:1488144‑M2/1‑88 (MQ=255)

   aGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagt                                                                                        >  2:3114131‑M2/1‑87 (MQ=255)

   aGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagt                                                                                        >  2:192881‑M2/1‑87 (MQ=255)

     ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc                                                                                      >  2:2583727‑M2/1‑85 (MQ=255)

     ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc                                                                                      >  1:3145502‑M2/1‑85 (MQ=255)

     ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc                                                                                      >  1:572283‑M2/1‑85 (MQ=255)

     ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc                                                                                      >  1:1553341‑M2/1‑85 (MQ=255)

     ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc                                                                                      >  2:1742272‑M2/1‑85 (MQ=255)

     ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc                                                                                      <  2:901249‑M2/91‑7 (MQ=255)

      gAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttct                                                                                     <  2:2948803‑M2/91‑8 (MQ=255)

        aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttctcc                                                                                   <  2:611482‑M2/91‑10 (MQ=255)

        aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttctcc                                                                                   <  1:3769779‑M2/91‑10 (MQ=255)

        aaTATGATGATTTAGCGTAATGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttctcc                                                                                   <  2:3389348‑M2/91‑10 (MQ=255)

          tatGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAt                                                                                 <  1:2230906/91‑1 (MQ=255)

           atgatgATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtt                                                                                >  1:2761400/1‑91 (MQ=255)

           atgatgATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtt                                                                                >  1:3695247/1‑91 (MQ=255)

           atgatgATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtt                                                                                >  1:1739710/1‑91 (MQ=255)

            tgatgaTTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttt                                                                               >  1:2180129/1‑91 (MQ=255)

             gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTTGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                              <  2:2806516/91‑1 (MQ=255)

             gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                              <  1:137664/91‑1 (MQ=255)

             gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                              <  2:3839965/91‑1 (MQ=255)

             gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                              <  2:2626950/91‑1 (MQ=255)

              atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt                                                                             <  2:3254562/91‑1 (MQ=255)

              atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt                                                                             >  1:2508258/1‑91 (MQ=255)

               tgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTg                                                                            <  2:3737200/91‑1 (MQ=255)

                gatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGt                                                                           >  1:1095709/1‑91 (MQ=255)

                  tttAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAt                                                                         <  2:685007/91‑1 (MQ=255)

                     aGCGTATTGATAGCGCAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAtttt                                                                      >  1:3558221/1‑91 (MQ=255)

                      gCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTg                                                                     >  2:764290/1‑91 (MQ=255)

                      gCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTg                                                                     >  2:3482700/1‑91 (MQ=255)

                      gCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTCTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTg                                                                     >  1:3869804/1‑91 (MQ=255)

                       cGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGc                                                                    >  2:3011803/1‑91 (MQ=255)

                        gTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCa                                                                   <  2:2256419/91‑1 (MQ=255)

                         tATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCat                                                                  <  2:750133/91‑1 (MQ=255)

                         tATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCat                                                                  <  1:468994/91‑1 (MQ=255)

                          aTTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCata                                                                 >  1:753045/1‑91 (MQ=255)

                          aTTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCata                                                                 >  2:1022322/1‑91 (MQ=255)

                           ttGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCatat                                                                <  2:1393955/91‑1 (MQ=255)

                            tGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAtata                                                               <  2:1741652/91‑1 (MQ=255)

                            tGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAtata                                                               <  1:872260/91‑1 (MQ=255)

                            tGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAtata                                                               >  1:1986251/1‑91 (MQ=255)

                              aTAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaa                                                             <  2:1977800/91‑1 (MQ=255)

                              aTAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaa                                                             >  2:2569127/1‑91 (MQ=255)

                               tAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaa                                                            >  2:3449006/1‑91 (MQ=255)

                               tAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaa                                                            >  2:1949939/1‑91 (MQ=255)

                                agggAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaaa                                                           >  1:1753938/4‑91 (MQ=255)

                                aGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaaa                                                           <  1:3806822/91‑1 (MQ=255)

                                 gCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAt                                                          >  1:2389962/1‑91 (MQ=255)

                                  cGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAtt                                                         >  1:1682355/1‑91 (MQ=255)

                                  cGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAtt                                                         >  2:466988/1‑91 (MQ=255)

                                   gAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATta                                                        >  1:1471156/1‑91 (MQ=255)

                                    aaaaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaa                                                       <  1:163710/91‑1 (MQ=255)

                                       atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata                                                    >  1:1056868/1‑91 (MQ=255)

                                       atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTGTGTATTTTGCATATAAAAATtaaata                                                    <  2:2212395/91‑1 (MQ=255)

                                         ataataAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaataaa                                                  <  1:1299006/91‑1 (MQ=255)

                                           aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat                                                <  2:1005353/91‑1 (MQ=255)

                                           aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat                                                >  1:1441503/1‑91 (MQ=255)

                                           aataaAACAATACAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat                                                >  1:2994629/1‑91 (MQ=255)

                                            ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTTTATTTTTCATATAAAAATTaaataaaata                                               >  2:806049/1‑91 (MQ=255)

                                            ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata                                               >  2:2783442/1‑91 (MQ=255)

                                            ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata                                               >  2:692807/1‑91 (MQ=255)

                                            ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata                                               >  2:692723/1‑91 (MQ=255)

                                             taaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTTCATATAAAAATTAaataaaataa                                              >  2:835391/1‑91 (MQ=255)

                                               aaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg                                            <  2:964691/91‑1 (MQ=255)

                                               aaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg                                            <  1:3051687/91‑1 (MQ=255)

                                                 aCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGta                                          <  1:1375800/91‑1 (MQ=255)

                                                  cAATAGAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGtat                                         <  2:3573481/91‑1 (MQ=255)

                                                   aaTATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGtata                                        <  1:3149891/91‑1 (MQ=255)

                                                      ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa                                     >  2:2390917/1‑91 (MQ=255)

                                                         gtgtGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg                                  >  2:1166460/1‑91 (MQ=255)

                                                         aaatgGAGAACTTTTGATATTTTATAAATATTGAAGTTCAAAATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg                                  <  2:244333/88‑1 (MQ=255)

                                                            tgGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTaa                               <  1:1764300/91‑1 (MQ=255)

                                                              gagaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAATAATTAAATAAAATAAGGTATATTAAGGTAAAg                             <  2:3807555/91‑1 (MQ=255)

                                                               agaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGt                            <  2:2131911/91‑1 (MQ=255)

                                                               agaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGt                            <  1:303095/91‑1 (MQ=255)

                                                                  aCTTTTGATATTTTATAAATATTGaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttccct                         <  1:618440‑M2/91‑68 (MQ=255)

                                                                  aCTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGtata                         <  1:2815100/91‑1 (MQ=255)

                                                                   cTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATaa                        >  1:2933835/1‑91 (MQ=255)

                                                                     tttGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAt                      >  2:1128001/1‑91 (MQ=255)

                                                                      ttGATATTTTATAAATATTGaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttccctcaac                     <  1:2876209‑M2/91‑72 (MQ=255)

                                                                       tGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAtata                                                               <  2:3729719/48‑1 (MQ=255)

                                                                       tGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAtata                                                               >  1:3729719/1‑48 (MQ=255)

                                                                       tGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAttt                    >  2:1438464/1‑91 (MQ=255)

                                                                        gATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAtttt                   <  2:454625/91‑1 (MQ=255)

                                                                         atatTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTta                  <  1:2589883/91‑1 (MQ=255)

                                                                           atTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaa                >  1:2134766/1‑91 (MQ=255)

                                                                             tttATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaata              >  2:1661099/1‑91 (MQ=255)

                                                                             tttATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaata              >  1:524221/1‑91 (MQ=255)

                                                                             tttATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATGAAATAAAATAAGGTATATAGAGGTAAAGTATAAATTTtaaata              >  2:3614727/1‑91 (MQ=255)

                                                                              ttATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaataa             <  2:2853868/91‑1 (MQ=255)

                                                                                ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat           <  2:2938100/91‑1 (MQ=255)

                                                                                ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat           <  1:3263336/91‑1 (MQ=255)

                                                                                 taAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATg          <  2:537613/91‑1 (MQ=255)

                                                                                 taAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATg          >  2:3314571/1‑91 (MQ=255)

                                                                                 taAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATg          >  1:1389752/1‑91 (MQ=255)

                                                                                    atatTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATgggg       <  2:2508258/91‑1 (MQ=255)

                                                                                         gAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGa  >  2:408044/1‑91 (MQ=255)

TTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGA  >  USA300TCH1516_ALE/145589‑145768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.