| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 145658 | 178 (0.930) | 9 (0.050) | 6/140 | NT | 5.3% | intergenic (+83/‑113) | noc_1/USA300HOU_RS00655 | Nucleoid occlusion protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 145678 | 165 (0.990) | intergenic (+103/‑93) | noc_1/USA300HOU_RS00655 | Nucleoid occlusion protein/hypothetical protein | |||||
Only 100 of 272 total aligned reads displayed.
GCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAT > USA300TCH1516_ALE/145569‑145748 | gCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACttt < 2:3865559/91‑1 (MQ=255)gCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACttt < 2:1583966/91‑1 (MQ=255)gCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACttt > 2:163710/1‑91 (MQ=255) cAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACtttt > 1:1963408/1‑91 (MQ=255) cAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACtttt < 1:2582665/91‑1 (MQ=255) aGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGata < 1:956854/91‑1 (MQ=255) ttttACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAtt > 1:3069234/1‑91 (MQ=255) ttttACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAtt > 1:1318821/1‑91 (MQ=255) ttttACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAtt > 1:2286767/1‑91 (MQ=255) ttACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAtttt < 1:1015672/91‑1 (MQ=255) ttACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAtttt < 2:2704263/91‑1 (MQ=255) tACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTta < 2:3597161/91‑1 (MQ=255) tACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTta > 2:3406223/1‑91 (MQ=255) aCTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTtat > 2:3595329/1‑91 (MQ=255) cTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAATTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTtata < 2:3001340/91‑1 (MQ=255) cTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAtttataa < 1:381103/91‑5 (MQ=255) cTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTtata < 1:3093114/91‑1 (MQ=255) cTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTtata < 1:2815132/91‑1 (MQ=255) tgATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAat < 2:424441/91‑1 (MQ=255) gATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAata > 2:3762083/1‑91 (MQ=255) aTGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAatat < 1:3266154/91‑1 (MQ=255) tGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATAtt < 1:885293/91‑1 (MQ=255) gTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTcaatatttataaaatatcaa < 1:2876209‑M1/91‑21 (MQ=255) gAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaag > 1:3155816‑M2/1‑88 (MQ=255) gAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaag > 2:1488144‑M2/1‑88 (MQ=255) gAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaag > 1:1846748‑M2/1‑88 (MQ=255) aGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTcaatatttataaaatatcaaaagt < 1:618440‑M1/91‑25 (MQ=255) aGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagt > 2:192881‑M2/1‑87 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc > 2:3612491‑M2/1‑85 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc > 1:3145502‑M2/1‑85 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc > 2:1767848‑M2/1‑85 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttc > 2:1742272‑M2/1‑85 (MQ=255) gAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttct < 2:2948803‑M2/91‑8 (MQ=255) aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttctcc < 2:611482‑M2/91‑10 (MQ=255) aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttctcc < 1:3769779‑M2/91‑10 (MQ=255) aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGaagttctcc < 2:3495673‑M2/91‑10 (MQ=255) tatGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGcagttctccct < 2:617313‑M2/91‑12 (MQ=255) tatGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAt < 1:2230906/91‑1 (MQ=255) atgatgATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtt > 1:3721185/1‑91 (MQ=255) gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt < 2:1207192/91‑1 (MQ=255) gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt > 1:445398/1‑91 (MQ=255) atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt < 1:257344/91‑1 (MQ=255) gatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGt < 1:1378010/91‑1 (MQ=255) tAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAttt > 1:2783586/1‑91 (MQ=255) aGCGTATTGATAGCGCAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAtttt > 1:3558221/1‑91 (MQ=255) aGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAtttt > 1:2161859/1‑91 (MQ=255) gCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTg > 2:3482700/1‑91 (MQ=255) cGTATTGATAGCGAAAATATAATAAAGCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGc > 2:2208359/1‑91 (MQ=255) gTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCa < 2:2391259/91‑1 (MQ=255) tATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTcaatatttataaaatatcaaaagttctccacactatattgttttat < 2:2507141‑M1/91‑47 (MQ=255) tATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCat < 2:750133/91‑1 (MQ=255) aTTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCata > 1:753045/1‑91 (MQ=255) ttGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCatat < 1:2507225/91‑1 (MQ=255) gATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaa < 1:2348144/91‑1 (MQ=255) aTAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaa > 2:2569127/1‑91 (MQ=255) aTAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaa < 2:1977800/91‑1 (MQ=255) agggAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaaa > 1:1753938/4‑91 (MQ=255) aGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaaa < 1:3806822/91‑1 (MQ=255) gCGAACATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAt < 2:3147812/91‑1 (MQ=255) cGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAtt > 2:466988/1‑91 (MQ=255) cGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAtt > 1:1682355/1‑91 (MQ=255) gAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATta > 1:1471156/1‑91 (MQ=255) atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata > 1:1056868/1‑91 (MQ=255) ataataAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCATTTTTTGTATTTTGCATATAAAAATtaaataaa < 2:803226/91‑1 (MQ=255) aaataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaa < 1:1580607/90‑1 (MQ=255) ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata > 2:2256147/1‑91 (MQ=255) ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata > 2:692780/1‑91 (MQ=255) ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata > 2:692626/1‑91 (MQ=255) aaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg < 1:3051687/91‑1 (MQ=255) aCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGta < 1:1375801/91‑1 (MQ=255) aCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGta < 1:552813/91‑1 (MQ=255) cAATATAGTGTGGAGATCTTTTGATATTTTATAAATATTGAAGTTCTCTATTTTTGTATTTTGAATATAAAAATTAAATAAAATAAGGtat < 2:958639/91‑1 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat < 2:2847509/91‑1 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat < 2:2794919/91‑1 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat > 1:522595/1‑91 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat > 2:1427081/1‑91 (MQ=255) aGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAg > 2:1007717/1‑91 (MQ=255) gtgtGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg > 2:1166460/1‑91 (MQ=255) gtgGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTa < 2:806692/91‑1 (MQ=255) ggAGAACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcattacgctaaatcatcatatt < 2:3389348‑M1/91‑83 (MQ=255) gagaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAATAATTAAATAAAATAAGGTATATTAAGGTAAAg < 2:3807555/91‑1 (MQ=255) gagaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAg > 2:2337103/1‑91 (MQ=255) agaACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttc < 2:2948748‑M1/91‑85 (MQ=255) agaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGt < 2:2131911/91‑1 (MQ=255) agaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGt < 2:307526/91‑1 (MQ=255) agaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGt < 2:471948/91‑1 (MQ=255) agaACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGt < 1:302901/91‑1 (MQ=255) gaACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttcc > 2:1742088‑M1/1‑6 (MQ=255) gaACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttcc > 2:2583727‑M1/1‑6 (MQ=255) gaACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttcc > 1:3144117‑M1/1‑6 (MQ=255) gaACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttcc < 2:901249‑M1/91‑86 (MQ=255) gaACTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttcc > 1:1553341‑M1/1‑6 (MQ=255) aaCTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGtat > 1:1749395/1‑91 (MQ=255) cTTcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttccctc > 1:1842802‑M1/1‑3 (MQ=255) cTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATaa > 1:2933835/1‑91 (MQ=255) cTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATaa > 2:2620757/1‑91 (MQ=255) ttttGATATTTTATAAATATTGaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttccctca < 1:3147648‑M2/91‑70 (MQ=255) tttGATATTTTATAAATATTGaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcttatttccctcaa < 1:1208673‑M2/91‑71 (MQ=255) tttGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAt > 2:1128001/1‑91 (MQ=255) tcaatatttataaaatatcaaaagttctccacactatattgttttattatattttcgctatcaatacgctaaatcatcatatttccctcaa < 1:2129622‑M1/91‑91 (MQ=255) | GCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAT > USA300TCH1516_ALE/145569‑145748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |