| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 309797 = | 182 (0.960) | 10 (0.060) | 9/134 | NT | 7.8% | intergenic (+54/+54) | lrgB/yydK | Antiholin‑like protein LrgB/putative HTH‑type transcriptional regulator YydK |
| ? | USA300TCH1516_ALE | 309842 = | 86 (0.540) | intergenic (+99/+9) | lrgB/yydK | Antiholin‑like protein LrgB/putative HTH‑type transcriptional regulator YydK | |||||
CGTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/309899‑309797‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatagacg‑tttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAT > USA300TCH1516_ALE/309842‑309931 CGTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGT > 2:308237/1‑91CGTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGT > 2:309394/1‑91CGTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGT > 2:948177/1‑91 GTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTA < 1:1136978/91‑1 GTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTA < 1:1137142/91‑1 ATTTCATTATCGTCATGGACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATA < 1:3330427/91‑1 ATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATA < 2:2631214/91‑1 ATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATA < 2:3234896/91‑1 ATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATA < 1:3330443/91‑1 ATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATA < 2:967841/91‑1 TTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAG < 1:983001/91‑1 TTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAG > 2:3120690/1‑91 TTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAG > 1:1758605/1‑91 TTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGA < 1:417124/91‑1 TTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGA > 2:2864777/1‑91 TTCATTATCGTCATGCACAGATTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGA > 2:947762/1‑91 TCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGAC > 1:2137972/1‑91 TCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGAC > 1:2137984/1‑91 TCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGAC > 2:1208384/1‑91 TCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGAC < 2:588777/91‑1 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG > 2:28086/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG > 1:3291426/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG > 1:2033428/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG > 1:2034627/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG > 1:2510369/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG > 1:2510263/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGAATAGACG > 1:1419048/1‑91 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACG < 1:29920/91‑1 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACG < 1:402358/91‑1 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACG < 1:401765/91‑1 CATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACG < 1:401746/91‑1 ATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑T > 1:3503080/1‑91 ATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑T < 2:1765597/91‑1 TTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TT > 1:1051811/1‑91 TATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTT > 2:2460729/1‑91 TATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTT < 1:290930/91‑1 ATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTT < 2:1747167/91‑1 ATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTT < 2:1747373/91‑1 ATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTT < 2:1747739/91‑1 TCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACG‑TTTTT < 1:3004316/91‑1 GTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATACTCCAGTTTAT‑ATCTGGGATATAGACG‑TTTTTAT < 1:2003823/91‑1 GTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGA > 1:3785270/1‑91 TCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATTAAACTGTGCATGACGATAATGAA > 2:1689133/1‑91 TCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAA > 1:445403/1‑91 TCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAA > 1:3177558/1‑91 ATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATA > 2:314007/1‑91 ATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATA > 1:3120346/1‑91 TATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATAC > 1:825457/1‑91 CCCAGTTATA‑AACTGGAGTATAGACGTTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGA > 2:1253202/1‑91 CCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATG > 2:936634/1‑91 CCAGTTATA‑AACTGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATG > 2:937074/1‑91 TGGAGTATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCA < 2:825457/91‑1 TATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGG > 1:202031/1‑91 ATAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAATGGT > 1:3039834/1‑91 TAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTT > 1:453013/1‑91 TAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTT > 1:2216515/1‑91 TAGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTT > 1:1507877/1‑91 AGACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTT > 2:2189655/1‑91 GACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTG < 1:598070/91‑1 GACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTG > 1:2691698/1‑91 GACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTG < 1:829710/91‑1 GACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTG > 1:40472/1‑91 GACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTG < 1:3222090/91‑1 ACG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGC < 2:713542/91‑1 CG‑TTTTTATGTATTTATTATTTTTTTCTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCC < 2:3368944/91‑1 CG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCC > 2:989498/1‑91 CG‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCC < 1:2467730/91‑1 G‑TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCA < 1:1970997/91‑1 TTTTTATGTATTTATTACTTTTTCCTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAG < 2:2969340/91‑1 TTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAG < 1:995193/91‑1 TTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTC > 2:3458603/1‑91 TTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTC < 2:3363656/91‑1 TTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTC < 2:3363627/91‑1 TTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTC < 1:219451/91‑1 TTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTC < 2:2090231/91‑1 TTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGC < 1:2555549/85‑1 TTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGC > 2:2555549/1‑85 TATGTATTTTTTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAT > 2:950455/1‑91 TATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAT > 2:1067012/1‑91 TATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAT < 1:1415216/91‑1 CGTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAATAAATACATAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACG‑TTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/309899‑309797‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatagacg‑tttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAT > USA300TCH1516_ALE/309842‑309931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |