BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	309797 =	182 (0.960)	10 (0.060)	9/134	NT	7.8%	intergenic (+54/+54)	lrgB/yydK	Antiholin‑like protein LrgB/putative HTH‑type transcriptional regulator YydK
*	?	USA300TCH1516_ALE	309842 =	86 (0.540)	10 (0.060)	9/134	NT	7.8%	intergenic (+99/+9)	lrgB/yydK	Antiholin‑like protein LrgB/putative HTH‑type transcriptional regulator YydK

Only 100 of 242 total aligned reads displayed.

ACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCATT  >  USA300TCH1516_ALE/309752‑309932

aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAACAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTa                                                                                            >  2:594298/1‑91 (MQ=255)

aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAACCGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTa                                                                                            >  2:785029/1‑91 (MQ=255)

aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTa                                                                                            >  1:3465095/1‑91 (MQ=255)

aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTCTTTa                                                                                            >  2:784851/1‑91 (MQ=255)

  gtcatgcacagttttatattcctagtaaaaagtaataaatacataaaaacgtctatactccagtttatatctgggatatagacgtttttAt                                                                                           <  1:2003823‑M2/2‑1 (MQ=255)

  cTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATg                                                                                          <  2:1249177/91‑1 (MQ=255)

  cTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATg                                                                                          <  1:1858829/91‑1 (MQ=255)

   tAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGt                                                                                         >  1:795716/1‑91 (MQ=255)

    aaGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGta                                                                                        >  2:3552687/1‑91 (MQ=255)

    aaGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGta                                                                                        >  1:929712/1‑91 (MQ=255)

    aaGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGta                                                                                        >  2:1984606/1‑91 (MQ=255)

       cAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtattt                                                                                     <  2:933573/91‑1 (MQ=255)

        acgataataacaatggctcaaattgctattatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtattta                                                                                    >  1:2635102‑M2/34‑91 (MQ=255)

        aaGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtattta                                                                                    <  2:887851/91‑1 (MQ=255)

         cgataataacaatggctcaaattgctattatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtatttat                                                                                   >  2:1140796‑M2/33‑91 (MQ=255)

         aGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtatttat                                                                                   <  1:1032165/91‑1 (MQ=255)

         aGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtatttat                                                                                   >  1:28086/1‑91 (MQ=255)

         aGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGtatttat                                                                                   <  2:2700776/91‑1 (MQ=255)

             AATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACt                                                                               >  2:50120‑M1/1‑91 (MQ=255)

              ATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACtt                                                                              <  2:3072419‑M1/91‑1 (MQ=255)

               TAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACttt                                                                             <  1:3725169‑M1/91‑1 (MQ=255)

               TAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACCCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACttt                                                                             >  1:3097307‑M1/1‑91 (MQ=255)

                AGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACtttt                                                                            <  1:1414720‑M1/91‑1 (MQ=255)

                AGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACtttt                                                                            <  1:1665733‑M1/91‑1 (MQ=255)

                  caatggctcaaattgctattatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTa                                                                          >  2:3788307‑M2/24‑91 (MQ=255)

                   aaTTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTAc                                                                         >  1:2496605/1‑91 (MQ=255)

                   aaTTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTAc                                                                         <  1:1377702/91‑1 (MQ=255)

                       tGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAgg                                                                     <  1:958463/91‑1 (MQ=255)

                       tGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAgg                                                                     <  1:3777826/91‑1 (MQ=255)

                          gCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAat                                                                  >  2:3866550/1‑91 (MQ=255)

                           ccATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAata                                                                 >  2:2480539/1‑91 (MQ=255)

                           ccATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAata                                                                 >  2:403875/1‑91 (MQ=255)

                           ccATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAata                                                                 <  2:3002695/91‑1 (MQ=255)

                               tGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTATGAATATaaa                                                             <  1:1952517/91‑1 (MQ=255)

                                gTTATTATCGTAAAAAAACGTCTATACTCCAGAT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATaaaa                                                            >  1:617636/1‑91 (MQ=255)

                                 ttattaTCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAAc                                                           <  1:1059701/91‑1 (MQ=255)

                                 ttattaTCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAAc                                                           <  2:3875922/91‑1 (MQ=255)

                                  tattatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACt                                                          >  2:2829681‑M2/8‑91 (MQ=255)

                                   attatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtg                                                         <  1:106037‑M2/85‑1 (MQ=255)

                                   attatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtg                                                         <  2:3718743‑M2/85‑1 (MQ=255)

                                    ttatcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtgt                                                        >  2:676899‑M2/6‑91 (MQ=255)

                                      atcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGc                                                      >  2:326267‑M2/4‑91 (MQ=255)

                                       tcGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCa                                                     >  2:3399347‑M2/3‑91 (MQ=255)

                                        cGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCAt                                                    <  2:3214171‑M2/90‑1 (MQ=255)

                                        cGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCAt                                                    <  2:2545480‑M2/90‑1 (MQ=255)

                                         gTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATg                                                   <  2:1391652/91‑1 (MQ=255)

                                          tAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGa                                                  <  1:1774854/91‑1 (MQ=255)

                                           aaaaaaaCGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGAc                                                 >  1:1715075/1‑91 (MQ=255)

                                             AAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGa                                               <  1:3004316‑M1/91‑1 (MQ=255)

                                              AAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGAt                                              <  2:1747167‑M1/91‑1 (MQ=255)

                                                 ACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAAt                                           <  2:1765597‑M1/91‑1 (MQ=255)

                                                 ACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAAt                                           >  1:3503080‑M1/1‑91 (MQ=255)

                                                  CGTCTATTCTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATg                                          >  1:1419048‑M1/1‑91 (MQ=255)

                                                  CGTCTATATCCCAGTTATA‑AACTGGAGTATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATg                                          <  1:401746‑M1/91‑1 (MQ=255)

                                                  CGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATg                                          >  1:2510263‑M1/1‑91 (MQ=255)

                                                  CGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATg                                          >  1:2033428‑M1/1‑91 (MQ=255)

                                                  CGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATg                                          >  1:3291426‑M1/1‑91 (MQ=255)

                                                   GTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGa                                         >  1:2137972‑M1/1‑91 (MQ=255)

                                                    TCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAATCTGTGCATGACGATAATGaa                                        >  2:947762‑M1/1‑91 (MQ=255)

                                                    TCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGaa                                        <  1:417124‑M1/91‑1 (MQ=255)

                                                     tctatatcccagttataaactggagtatagacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGaa                                        >  1:3177558‑M2/39‑91 (MQ=255)

                                                      TATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAAt                                      <  2:2631214‑M1/91‑1 (MQ=255)

                                                        TACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATAc                                    <  1:1136978‑M1/91‑1 (MQ=255)

                                                         tatcccagttataaactggagtatagacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATAc                                    >  1:825457‑M2/35‑91 (MQ=255)

                                                         ACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACg                                   >  2:309394‑M1/1‑91 (MQ=255)

                                                          cTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGa                                  >  1:3335843/1‑91 (MQ=255)

                                                           tCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGAt                                 >  1:2352634/1‑91 (MQ=255)

                                                             cAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGt                               >  2:2797120/1‑91 (MQ=255)

                                                               gTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCa                             >  2:3172543/1‑91 (MQ=255)

                                                                tt‑tATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGAAGGCAg                            >  2:1444071/1‑91 (MQ=255)

                                                                 t‑tATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGa                           <  2:163909/91‑1 (MQ=255)

                                                                 t‑tATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGa                           <  1:1693764/91‑1 (MQ=255)

                                                                 t‑tATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGa                           <  2:3667326/91‑1 (MQ=255)

                                                                    ataACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATg                         <  2:3465095/91‑1 (MQ=255)

                                                                       aCTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAAt                      >  2:1582027/1‑91 (MQ=255)

                                                                       aCTGGGATATAGACGTTTTTATGTATCTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAAt                      >  2:2213159/1‑91 (MQ=255)

                                                                        cTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATc                     >  1:3703844/1‑91 (MQ=255)

                                                                        cTGGGATATAGACGTTTTTATGTATTGATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATc                     <  2:2772960/91‑1 (MQ=255)

                                                                         tggagtatagacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCa                    <  2:825457‑M2/73‑1 (MQ=255)

                                                                          gggATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCaa                   <  2:2176025/91‑1 (MQ=255)

                                                                          gggATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCaa                   <  1:2867889/91‑1 (MQ=255)

                                                                          gggATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCaa                   >  1:1308441/1‑91 (MQ=255)

                                                                          gggATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCaa                   >  1:2274510/1‑91 (MQ=255)

                                                                          gggATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGACAGATGAATCaa                   <  1:2984702/91‑1 (MQ=255)

                                                                          gggATATAGACGTTTTTATGTATGTATTACTTTTTACTAGGAATATAAAACTGTGCATGGCGATAATGAAATACGATGTCAGATGAATCaa                   <  2:2966133/91‑1 (MQ=255)

                                                                                tagacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGtt             >  1:2216515‑M2/12‑91 (MQ=255)

                                                                                tagacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGtt             >  1:453013‑M2/12‑91 (MQ=255)

                                                                                 agacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGttt            >  2:2189655‑M2/11‑91 (MQ=255)

                                                                                  gacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTg           <  1:3222090‑M2/82‑1 (MQ=255)

                                                                                  gacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTg           <  1:598070‑M2/82‑1 (MQ=255)

                                                                                  gacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTg           >  1:40472‑M2/10‑91 (MQ=255)

                                                                                  gacgtttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTg           >  1:2691698‑M2/10‑91 (MQ=255)

                                                                                      tttttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAg       <  1:995193‑M2/86‑1 (MQ=255)

                                                                                        tttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTc     <  1:219451‑M2/88‑1 (MQ=255)

                                                                                        tttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTc     <  2:3363627‑M2/88‑1 (MQ=255)

                                                                                         ttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGc          >  2:2555549‑M2/3‑85 (MQ=255)

                                                                                         ttATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGc          <  1:2555549‑M2/83‑1 (MQ=255)

                                                                                          tATGTATTTTTTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAt   >  2:950455‑M2/2‑91 (MQ=255)

                                                                                           aTGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCAtt  <  1:1528221/91‑1 (MQ=255)

                                                                                           aTGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTACCAGTCAtt  >  1:330619/1‑91 (MQ=255)

ACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTT‑TATAACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGATAATGAAATACGATGTCAGATGAATCAAAGGGTTTGCCAGTCATT  >  USA300TCH1516_ALE/309752‑309932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.