BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	309797 =	182 (0.960)	10 (0.060)	9/134	NT	7.8%	intergenic (+54/+54)	lrgB/yydK	Antiholin‑like protein LrgB/putative HTH‑type transcriptional regulator YydK
*	?	USA300TCH1516_ALE	309842 =	86 (0.540)	10 (0.060)	9/134	NT	7.8%	intergenic (+99/+9)	lrgB/yydK	Antiholin‑like protein LrgB/putative HTH‑type transcriptional regulator YydK

Only 100 of 274 total aligned reads displayed.

AGCAGTTGTGCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGA  >  USA300TCH1516_ALE/309707‑309887

atgactggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacata                                                                                             <  1:1415216‑M1/1‑1 (MQ=255)

atgactggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaaaaaatacata                                                                                             >  2:950455‑M1/91‑91 (MQ=255)

 gCAGTTGTGCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTaaaa                                                                                            >  2:1929646/1‑91 (MQ=255)

  gactggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacataaa                                                                                           >  2:3458603‑M1/89‑91 (MQ=255)

  gactggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacataaa                                                                                           <  2:3363627‑M1/3‑1 (MQ=255)

  cAGTTGTGCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTaaaaa                                                                                           >  1:3875922/1‑91 (MQ=255)

   aGTTGTGCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTaaaaaa                                                                                          <  1:124508/91‑1 (MQ=255)

     tggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAAc                                                                                        <  1:1970997‑M1/6‑1 (MQ=255)

      tgtgCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACg                                                                                       <  2:1252874/91‑1 (MQ=255)

      tgtgCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACg                                                                                       <  1:585144/91‑1 (MQ=255)

      ggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACg                                                                                       <  1:2467730‑M1/7‑1 (MQ=255)

      ggcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagaaaaaaataataaatacatAAAAACg                                                                                       <  2:3368944‑M1/7‑1 (MQ=255)

       gtgCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGt                                                                                      >  2:2467730/1‑91 (MQ=255)

       gcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacataa                                                                                            <  1:2555549‑M1/2‑1 (MQ=255)

       gcaaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacataa                                                                                            >  2:2555549‑M1/84‑85 (MQ=255)

        caaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTc                                                                                     <  1:3222090‑M1/9‑1 (MQ=255)

        caaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTc                                                                                     <  1:829710‑M1/9‑1 (MQ=255)

         gCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCt                                                                                    >  1:2545939/1‑91 (MQ=255)

         aaaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTCt                                                                                    >  2:2189655‑M1/82‑91 (MQ=255)

          ccTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCta                                                                                   >  1:2054139/1‑91 (MQ=255)

          aaccctttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTCta                                                                                   >  1:453013‑M1/81‑91 (MQ=255)

           cTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCtat                                                                                  >  2:726707/1‑91 (MQ=255)

           accatttgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTCtat                                                                                  >  1:3039834‑M1/80‑91 (MQ=255)

            tGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCtata                                                                                 <  1:1018931/91‑1 (MQ=255)

            tGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCtata                                                                                 <  1:2137622/91‑1 (MQ=255)

             gTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAACAAACGTCTATAc                                                                                <  1:2977008/91‑1 (MQ=255)

             gTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATAc                                                                                <  2:1186023/91‑1 (MQ=255)

             gTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATAc                                                                                <  2:2140360/91‑1 (MQ=255)

               cTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTc                                                                              >  1:3584516/1‑91 (MQ=255)

                tttGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTcc                                                                             <  1:1523844/91‑1 (MQ=255)

                tttGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTcc                                                                             >  1:3368944/1‑91 (MQ=255)

                 tgattcatctgacatcgtatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTCTATACTCCa                                                                            <  2:825457‑M1/18‑1 (MQ=255)

                  tGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAg                                                                           <  1:3541910/91‑1 (MQ=255)

                   gTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGt                                                                          >  1:168591/1‑91 (MQ=255)

                   gTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGt                                                                          >  2:1308070/1‑91 (MQ=255)

                    tAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGtt                                                                         >  1:2516362/1‑91 (MQ=255)

                    tAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGtt                                                                         <  2:1530392/91‑1 (MQ=255)

                    tAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGtt                                                                         <  2:1859634/91‑1 (MQ=255)

                    tAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGtt                                                                         >  1:2864985/1‑91 (MQ=255)

                     aGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGttt                                                                        >  2:331695/1‑91 (MQ=255)

                     aGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGtta                                                                        <  2:553525/91‑2 (MQ=255)

                      gCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTta                                                                       <  2:1998867/91‑1 (MQ=255)

                      gCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTta                                                                       <  1:2777250/91‑1 (MQ=255)

                         atatTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑aa                                                                   >  1:3187871/1‑91 (MQ=255)

                          tatTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AAc                                                                  <  2:2069456/91‑1 (MQ=255)

                            ttcttcTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTg                                                                <  1:117504/91‑1 (MQ=255)

                             tcttctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTgg                                                               >  1:946264/1‑91 (MQ=255)

                             tcttctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTgg                                                               >  1:2643844/1‑91 (MQ=255)

                              cttctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTggg                                                              <  2:1085074/91‑1 (MQ=255)

                               ttctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGa                                                             >  2:2336959/1‑91 (MQ=255)

                                tctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGat                                                            >  1:15652/1‑91 (MQ=255)

                                 ctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGata                                                           >  1:933573/1‑91 (MQ=255)

                                 ctAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGata                                                           >  2:2801305/1‑91 (MQ=255)

                                  tatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTCTATACTCCAGTTTAT‑AACTGGGatat                                                          >  1:3120346‑M1/57‑91 (MQ=255)

                                  tatttcattatcgtcatgcacagttttatattcctagtaaaaagtaataaatacatAAAAACGTCTATACTCCAGTTTAT‑AACTGGGatat                                                          >  2:314007‑M1/57‑91 (MQ=255)

                                  tAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGatat                                                          <  2:1768488/91‑1 (MQ=255)

                                   aaaaCGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGAtata                                                         <  1:2175010/91‑1 (MQ=255)

                                    aaaCGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAg                                                        >  2:2922960/1‑91 (MQ=255)

                                    aaaCGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAg                                                        <  1:723554/91‑1 (MQ=255)

                                       cGAAAAATCTAAGCAATATAATAGCAATGGGAGCCATTGTTATTATCGTAAAAAAACGTCTATATCCCAGTGATA‑AACTGGAGTATAGACg                                                     <  2:3639020/91‑1 (MQ=12)

                                       cGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATATCCCAG‑TTATAAACTGGAGTATAGACg                                                     <  2:3425576/91‑1 (MQ=18)

                                       cGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACg                                                     >  1:796744/1‑91 (MQ=255)

                                           aaaCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGtttt                                                 <  2:2897818/91‑1 (MQ=255)

                                           aaaCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGtttt                                                 >  1:2284911/1‑91 (MQ=255)

                                             aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAACAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTa                                               >  2:594298/1‑91 (MQ=255)

                                             aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTa                                               >  1:3465095/1‑91 (MQ=255)

                                             aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTa                                               >  2:784879/1‑91 (MQ=255)

                                             aCCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTa                                               >  1:2300150/1‑91 (MQ=255)

                                               cTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATATCCCAGTTATA‑AACTGGAGTATAGACGttttttta                                             <  1:3684545/91‑4 (MQ=14)

                                               cTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATg                                             <  1:1858829/91‑1 (MQ=255)

                                               cTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATg                                             <  2:3274665/91‑1 (MQ=255)

                                                 aaGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGta                                           >  2:3552752/1‑91 (MQ=255)

                                                    tacgataataacaatggctcaaattgctattatcGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtattt                                        >  1:2807725‑M2/35‑91 (MQ=255)

                                                    cAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtattt                                        <  2:933573/91‑1 (MQ=255)

                                                     aaGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtattta                                       <  2:887851/91‑1 (MQ=255)

                                                     aaGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtattta                                       <  2:614849/91‑1 (MQ=255)

                                                      cgataataacaatggctcaaattgctattatcGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtatttat                                      >  2:1140796‑M2/33‑91 (MQ=255)

                                                      aGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtatttat                                      <  1:1032165/91‑1 (MQ=255)

                                                      aGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGtatttat                                      <  2:2700776/91‑1 (MQ=255)

                                                         TAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTAc                                   >  2:137797‑M1/1‑91 (MQ=255)

                                                           ATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACtt                                 <  1:1906077‑M1/91‑1 (MQ=255)

                                                            TAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACttt                                <  1:3725169‑M1/91‑1 (MQ=255)

                                                                aaTTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTAc                            <  1:1377702/91‑1 (MQ=255)

                                                                    tGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAgg                        <  1:3777826/91‑1 (MQ=255)

                                                                    tGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAgg                        <  1:958463/91‑1 (MQ=255)

                                                                       gCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAat                     >  2:3866550/1‑91 (MQ=255)

                                                                        ccATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAata                    >  2:403875/1‑91 (MQ=255)

                                                                        ccATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAata                    <  2:3002695/91‑1 (MQ=255)

                                                                        ccATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAata                    <  2:2628251/91‑1 (MQ=255)

                                                                         cATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAatat                   <  1:1719160/91‑1 (MQ=255)

                                                                         cATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAatat                   <  1:1820256/91‑1 (MQ=255)

                                                                         cATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAatat                   <  1:2221373/91‑1 (MQ=255)

                                                                          aTTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAAtata                  >  1:414869/1‑91 (MQ=255)

                                                                             gTTATTATCGTAAAAAAACGTCTATACTCCAGATTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATaaaa               >  1:617636/1‑91 (MQ=255)

                                                                              ttattaTCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAAc              <  2:3875922/91‑1 (MQ=255)

                                                                                attatcGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtg            <  2:3718743‑M2/85‑1 (MQ=255)

                                                                                attatcGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtg            <  1:106037‑M2/85‑1 (MQ=255)

                                                                                 ttatcGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtgt           <  2:3521108‑M2/86‑1 (MQ=255)

                                                                                 ttatcGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACtgt           >  2:3222090‑M2/6‑91 (MQ=255)

                                                                                     cGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCAt       <  2:2545480‑M2/90‑1 (MQ=255)

AGCAGTTGTGCCTGTCTTTGTAGCAATATTCTTCTAAAACGAAAAACCTAAGCAAGATAATAGCAATTTGAGCCATTGTTATTATCGTAAAAAAACGTCTATACTCCAGTTTAT‑AACTGGGATATAGACGTTTTTATGTATTTATTACTTTTTACTAGGAATATAAAACTGTGCATGACGA  >  USA300TCH1516_ALE/309707‑309887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.