| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 311196 | 163 (0.860) | 15 (0.090) | 9/148 | NT | 8.8% | coding (493/792 nt) | ptsG_3 | PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 311222 | 159 (0.900) | coding (519/792 nt) | ptsG_3 | PTS system glucose‑specific EIICBA component | |||||
TTTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/311101‑311196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattgAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGATTGC < USA300TCH1516_ALE/311222‑311133 TTTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTAT < 1:988368/91‑1TTTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTAT < 1:987431/91‑1TTTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTAT < 1:301965/91‑1TTTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTAT > 1:2242079/1‑91 TTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATG > 2:953361/1‑91 TTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGAT < 1:2037721/91‑1 TTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGAT < 1:1524463/91‑1 TTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGAT > 1:2655120/1‑91 TTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGAT < 2:796596/91‑1 TTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGAT < 2:3263342/91‑1 TAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATT < 2:356750/91‑1 TGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTA < 2:2371708/91‑1 TGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTA < 2:2371726/91‑1 AAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTAGT < 2:2762036/91‑1 AAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTAGT < 2:3037483/91‑1 GGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTAGTTG < 1:164231/91‑1 GGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTAGTTG < 2:910608/91‑1 CAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACA < 1:445996/91‑1 AATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTAGTTGGTACAATC < 2:2162673/91‑1 AATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑TACCAACTGCATGCTTAGTTGGTACAATC < 2:228079/91‑1 TCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACAATC < 1:1296398/91‑1 AAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATA < 1:468082/91‑1 AGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAG < 1:485188/91‑1 TCATGCAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATA < 2:3145680/91‑1 TCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATA < 1:2353185/91‑1 TGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTA < 1:3422770/91‑1 TGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGTGATTACTTTGGATTCTTCATGAGCTTTG < 1:1607632/91‑1 TGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTG > 1:800116/1‑91 TGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTG > 1:3413373/1‑91 TGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTG < 1:2940237/91‑1 TGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTG < 1:2939389/91‑1 TGATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTG < 1:2939375/91‑1 GATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGA < 2:418539/91‑1 GATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGA < 1:1188333/91‑1 ATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGAT < 1:925734/91‑1 ATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGAT < 1:877142/91‑1 ATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGAT < 1:3050859/91‑1 ATTGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGAT < 1:1119331/91‑1 TGAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGATTG < 2:913978/91‑1 GAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGATTGC < 1:1061333/91‑1 GAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGATTGC < 2:3654378/91‑1 GAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGATTGC < 2:3654583/91‑1 TTTTTAGAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/311101‑311196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattgAATACCAACTGCATGCTTAGTTGGTACAATCATAGATATTAAACCATTGAACGGTGCGATTACTTTGGATTCTTCATGAGCTTTGATTGC < USA300TCH1516_ALE/311222‑311133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |