BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 311196	163 (0.860)	15 (0.090)	9/148	NT	8.8%	coding (493/792 nt)	ptsG_3	PTS system glucose‑specific EIICBA component
*	?	USA300TCH1516_ALE	= 311222	159 (0.900)	15 (0.090)	9/148	NT	8.8%	coding (519/792 nt)	ptsG_3	PTS system glucose‑specific EIICBA component

Only 100 of 253 total aligned reads displayed.

GAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTGGAAGGTA  >  USA300TCH1516_ALE/311107‑311286

gagagaAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGt                                                                                           <  2:2296831/91‑1 (MQ=255)

gagagaAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGt                                                                                           >  1:1426385/1‑91 (MQ=255)

 agagaAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTa                                                                                          <  1:266362/91‑1 (MQ=255)

 agagaAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTa                                                                                          >  2:2509390/1‑91 (MQ=255)

  gagaAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTAc                                                                                         >  1:252226/1‑91 (MQ=255)

  gagaAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTAc                                                                                         >  1:2295742/1‑91 (MQ=255)

     aaaaTGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCaa                                                                                      <  2:1705261/91‑1 (MQ=255)

     aaaaTGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCaa                                                                                      <  2:1619794/91‑1 (MQ=255)

      aaaTGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAAc                                                                                     >  1:597814/1‑91 (MQ=255)

      aaaTGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAAc                                                                                     >  1:800782/1‑91 (MQ=255)

         tGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTac                                                                                  >  2:3853344/1‑90 (MQ=255)

         tGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTaa                                                                                  >  2:3267605/1‑91 (MQ=255)

          ggTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAg                                                                                 >  1:2883733/1‑91 (MQ=255)

           gTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGc                                                                                <  2:1639355/91‑1 (MQ=255)

           gTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGc                                                                                <  1:2742347/91‑1 (MQ=255)

              ggTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATg                                                                             >  1:1800244/1‑91 (MQ=255)

               gTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGc                                                                            <  1:2243544/91‑1 (MQ=255)

               gTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGc                                                                            <  1:3411770/91‑1 (MQ=255)

                tGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGtaccaactgcatgctta                                                                           <  2:2371726‑M1/91‑18 (MQ=255)

                tGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCa                                                                           >  1:923249/1‑91 (MQ=255)

                 gAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAg                                                                          <  2:323430/91‑1 (MQ=255)

                  aaGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGtaccaactgcatgcttagt                                                                         <  2:2762036‑M1/91‑20 (MQ=255)

                   aGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGtt                                                                        <  1:521178/91‑1 (MQ=255)

                     gCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGATTAATATCTATGATTGTACCAACTAAGCATGCAGTTgg                                                                      >  1:732259/1‑91 (MQ=255)

                           cAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTca                                                                <  2:913978‑M2/91‑3 (MQ=255)

                            aaTCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGtaccaactgcatgcttagttggtacaatc                                                               <  2:228079‑M1/91‑30 (MQ=255)

                            aaTCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGtaccaactgcatgcttagttggtacaatc                                                               <  2:2162673‑M1/91‑30 (MQ=255)

                             aTCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTcaat                                                              <  1:925734‑M2/91‑5 (MQ=255)

                             aTCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTcaat                                                              <  1:3050859‑M2/91‑5 (MQ=255)

                              tCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGaataccaactgcatgcttagttggtacaatc                                                             <  1:1296398‑M1/91‑32 (MQ=255)

                               cAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTcaatca                                                            <  1:2940237‑M2/91‑7 (MQ=255)

                               cAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTcaatca                                                            >  1:3413373‑M2/1‑85 (MQ=255)

                                 aaGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGaataccaactgcatgcttagttggtacaatcata                                                          <  1:468082‑M1/91‑35 (MQ=255)

                                  aGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGaataccaactgcatgcttagttggtacaatcatag                                                         <  1:485188‑M1/91‑36 (MQ=255)

                                   gCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCagaag                                                        <  1:2036872/91‑1 (MQ=255)

                                   gCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCagaag                                                        >  2:2938404/1‑91 (MQ=255)

                                     tCATGCAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGaataccaactgcatgcttagttggtacaatcatagata                                                      <  2:3145680‑M1/91‑39 (MQ=255)

                                     tCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGaataccaactgcatgcttagttggtacaatcatagata                                                      <  1:2353185‑M1/91‑39 (MQ=255)

                                     tCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGAc                                                      <  2:2190826/91‑1 (MQ=255)

                                      cATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACg                                                     >  2:609069/1‑91 (MQ=255)

                                       aTGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACgg                                                    >  2:1268995/1‑91 (MQ=255)

                                         gaagaaTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGgtg                                                  <  1:875909/91‑1 (MQ=255)

                                         gaagaaTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGgtg                                                  <  2:1994788/91‑1 (MQ=255)

                                         gaagaaTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGgtg                                                  <  1:2134991/91‑1 (MQ=255)

                                         gaagaaTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGgtg                                                  <  1:1690797/91‑1 (MQ=255)

                                           agaaTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGtgtg                                                <  2:2015337/91‑1 (MQ=255)

                                              aTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGAc                                             <  2:408049/91‑1 (MQ=255)

                                              aTCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGAc                                             <  2:75285/91‑1 (MQ=255)

                                               tCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACa                                            >  2:3423808/1‑91 (MQ=255)

                                               tCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACa                                            >  2:542350/1‑91 (MQ=255)

                                               tCCAAAGTAAACGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACa                                            <  1:1749030/91‑1 (MQ=255)

                                                ccAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACAt                                           >  2:3668242/1‑91 (MQ=255)

                                                 cAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATa                                          <  1:722072/91‑1 (MQ=255)

                                                   aaGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGt                                        >  1:3426092/1‑91 (MQ=255)

                                                   aaGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGt                                        >  1:136497/1‑91 (MQ=255)

                                                   aaGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGt                                        >  2:3175452/1‑91 (MQ=255)

                                                    aGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtc                                       <  2:2643169/91‑1 (MQ=255)

                                                     gTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCCGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtca                                      <  1:3269159/91‑1 (MQ=255)

                                                     gTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtca                                      <  2:1483054/91‑1 (MQ=255)

                                                     gTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtca                                      <  2:47600/91‑1 (MQ=255)

                                                     gTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtca                                      <  2:597814/91‑1 (MQ=255)

                                                     gTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtca                                      >  2:789654/1‑91 (MQ=255)

                                                      tAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcat                                     <  2:3494903/91‑1 (MQ=255)

                                                      tAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcat                                     <  2:1085964/91‑1 (MQ=255)

                                                      tAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcat                                     >  1:2837025/1‑91 (MQ=255)

                                                       aaTCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcatt                                    <  1:1353724/91‑1 (MQ=255)

                                                        aTCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcattc                                   >  2:3330866/1‑91 (MQ=255)

                                                         tCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcattca                                  >  1:2291370/1‑91 (MQ=255)

                                                          cGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGtcattcat                                 >  1:3206164/1‑91 (MQ=255)

                                                           gCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCata                                <  1:3790753/91‑1 (MQ=255)

                                                                   cAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTTGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTg                        <  1:3867392/91‑1 (MQ=255)

                                                                   cAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTg                        <  2:1386562/91‑1 (MQ=255)

                                                                   cAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTg                        <  2:1347768/91‑1 (MQ=255)

                                                                   cAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTg                        <  2:1763214/91‑1 (MQ=255)

                                                                      tGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAAt                     >  1:2367383/1‑91 (MQ=255)

                                                                      tGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAAt                     <  1:3538732/91‑1 (MQ=255)

                                                                       ggTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATa                    <  1:1268995/91‑1 (MQ=255)

                                                                        gTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATAc                   <  1:100429/91‑1 (MQ=255)

                                                                        gTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATAc                   >  1:2472641/1‑91 (MQ=255)

                                                                        gTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATAc                   <  1:3453552/91‑1 (MQ=255)

                                                                         tttAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACa                  <  2:183458/91‑1 (MQ=255)

                                                                          ttAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAg                 <  2:1152339/91‑1 (MQ=255)

                                                                             atagCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTg              <  1:3004720/91‑1 (MQ=255)

                                                                              tatCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGa             >  2:882090/1‑91 (MQ=255)

                                                                              tatCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGa             >  1:1983330/1‑91 (MQ=255)

                                                                                  tATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTg         <  1:1645645/91‑1 (MQ=255)

                                                                                  tATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTg         >  2:1052129/1‑91 (MQ=255)

                                                                                   aTGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTgg        <  1:3853344/91‑1 (MQ=255)

                                                                                    tGATTGaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgtgattactttggattcttcatgagctttg       <  1:1607632‑M1/91‑86 (MQ=255)

                                                                                    tGATTGaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttg       <  1:2939389‑M1/91‑86 (MQ=255)

                                                                                    tGATTGaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttg       <  1:2939375‑M1/91‑86 (MQ=255)

                                                                                     gATTGaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttga      <  1:1188333‑M1/91‑87 (MQ=255)

                                                                                     gATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTGGaa      >  2:2988919/1‑91 (MQ=255)

                                                                                      aTTGaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttgat     <  1:877142‑M1/91‑88 (MQ=255)

                                                                                      aTTGaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttgat     <  1:1119331‑M1/91‑88 (MQ=255)

                                                                                      aTTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTGGAAg     >  1:1939662/1‑91 (MQ=255)

                                                                                      aTTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTGGAAg     >  2:678393/1‑91 (MQ=255)

                                                                                      aTTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTGGAAg     >  2:1456340/1‑91 (MQ=255)

                                                                                         gaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttgattgc  <  1:1061333‑M1/91‑91 (MQ=255)

                                                                                         gaataccaactgcatgcttagttggtacaatcatagatattaaaccattgaacggtgcgattactttggattcttcatgagctttgattgc  <  2:3654583‑M1/91‑91 (MQ=255)

GAGAGAAAATGGTAGGTGAAGGCTTAGCAATCAAAGCTCATGAAGAATCCAAAGTAATCGCACCGTTCAATGGTTTAATATCTATGATTGTACCAACTAAGCATGCAGTTGGTATTCAATCAGAAGACGGTGTGGACATAGTCATTCATATTGGCTTGAATACAGTTGACTTGGAAGGTA  >  USA300TCH1516_ALE/311107‑311286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.