| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 326015 = | 176 (0.920) | 20 (0.120) | 13/142 | NT | 11.8% | intergenic (‑19/+49) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 326051 = | 143 (0.850) | intergenic (‑55/+13) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein | |||||
AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/326113‑326015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC > USA300TCH1516_ALE/326051‑326140 AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC > 2:933280/1‑91AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTC > 2:933045/1‑91 AATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAA < 1:2803512/91‑1 AATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAA < 1:2803281/91‑1 ATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAAT < 1:1474723/91‑1 ATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAAT < 1:2726561/91‑1 TGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 2:1717954/91‑1 TGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATC > 1:1724847/1‑91 TGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATC > 2:1966361/1‑91 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:2572904/91‑1 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT > 1:634706/1‑91 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT > 1:875723/1‑91 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT > 1:875746/1‑91 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:2572876/91‑1 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 2:3686355/91‑1 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT > 2:2158873/1‑91 GGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCT > 2:940091/1‑91 acaGCAAAATGTTTGAATTAAAATTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT < 2:3669919/88‑1 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT < 2:3669931/91‑1 GCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTT > 1:289611/1‑91 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA > 2:2509122/1‑91 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 2:2889784/91‑1 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 2:2891644/91‑1 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 2:3299329/91‑1 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA > 1:1127475/1‑91 CGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA > 2:3401292/1‑91 GGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA > 2:1641568/1‑90 GGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 1:1641568/90‑1 AACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGA > 1:452862/1‑91 TAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTATATTTGTTTC > 2:69139/1‑91 TAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTC > 2:68773/1‑91 ATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAT > 2:2517443/1‑91 TAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATT > 1:2566182/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTT > 1:1094958/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTT > 1:3828701/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTT > 2:1991320/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTT > 2:1866476/1‑91 AAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTT > 2:1866477/1‑91 TAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCG > 2:1886935/1‑91 TAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGACGCCTTTTTTAAAATTGATTCAAACATTTTGCCG > 2:1889364/1‑91 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGC > 1:3466764/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCA > 1:583778/1‑91 ATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTCGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAT > 2:96815/1‑91 ATTGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAT > 2:2189342/1‑91 TGGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTT > 2:567200/1‑91 GGAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTATTTTTTATTCAAACATTTTGCCGCCATTTT > 2:678444/1‑91 GAAGGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTT > 1:1637728/1‑91 GGTCATCTTGCCTTTCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTC > 2:3561329/1‑91 CAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAt > 2:1629292/1‑90 AATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGT < 1:318666/91‑1 ATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTT > 2:1709180/1‑91 ATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTT < 2:1430994/91‑1 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTTTTTTTTATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT > 2:1921699/1‑91 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT < 2:2417854/91‑1 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT > 1:2655809/1‑91 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT > 2:3393591/1‑91 TCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTT > 2:3393779/1‑91 CTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTT < 2:381530/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCGATTTTTTTCGATTTCTTTTTCAAGTTTTT > 2:175111/1‑91 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:1101051/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:2716267/91‑1 TTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTT < 1:335281/91‑1 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTTTTTTTCAAGTTTTTC > 2:3233284/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTt > 2:3231835/1‑90 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC > 2:1853733/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC > 1:2255692/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC > 1:2256072/1‑91 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC < 2:2126368/91‑1 TATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTC < 1:986352/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 1:2766490/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 2:1842085/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 1:1111149/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA > 1:1869371/1‑91 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA > 1:1869382/1‑91 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA > 1:842603/1‑91 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 2:3734501/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 2:3734365/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 1:2384390/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCA < 1:454696/91‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCC < 2:484637/60‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCC < 2:488051/60‑1 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCC > 1:488051/1‑60 ATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCC > 1:484637/1‑60 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC < 1:1792727/91‑1 TTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC < 1:1285280/91‑1 AAAATGGCGGCAAAATGTTTGAATCAATTTTAAAAAAGGCATCTAAATAACTAAAATATAAAAATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/326113‑326015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAC > USA300TCH1516_ALE/326051‑326140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |