| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 326015 = | 176 (0.920) | 20 (0.120) | 13/142 | NT | 11.8% | intergenic (‑19/+49) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 326051 = | 143 (0.850) | intergenic (‑55/+13) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein | |||||
Only 100 of 259 total aligned reads displayed.
TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGC > USA300TCH1516_ALE/325925‑326104 | gtgaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaa < 1:1285280‑M1/1‑1 (MQ=255) tgaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaAt < 1:1111149‑M1/2‑1 (MQ=255) tgaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaAt < 1:2384390‑M1/2‑1 (MQ=255) tgaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaAt > 1:1869371‑M1/90‑91 (MQ=255) gaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATa < 1:986352‑M1/3‑1 (MQ=255) gaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATa < 2:2126368‑M1/3‑1 (MQ=255) gaaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATa > 1:2255692‑M1/89‑91 (MQ=255) gaaaaacttgaaaaaaaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATa > 2:3233284‑M1/89‑91 (MQ=255) aatagATAATCAAATACCACTTTTTCATTATAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATa > 2:2351235/1‑91 (MQ=255) aatagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATa > 2:2068201/1‑91 (MQ=255) aatagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATa > 2:422856/1‑91 (MQ=255) aatagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATa < 2:101991/91‑1 (MQ=255) atagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAt > 2:1484912/1‑89 (MQ=255) atagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATaa > 1:1122927/1‑91 (MQ=255) aaaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATaa < 1:2716267‑M1/4‑1 (MQ=255) aaaaacttgaaaaagaaatcgaaaaaaatcgcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATaa > 2:175111‑M1/88‑91 (MQ=255) tagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAg < 2:2612800/91‑1 (MQ=255) tagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAg < 2:297794/91‑1 (MQ=255) tagATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAg < 1:3559408/91‑1 (MQ=255) aaaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAg < 2:381530‑M1/5‑1 (MQ=255) aaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGa < 2:2417854‑M1/6‑1 (MQ=255) aaacttgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaataaaaaaaaaaaaaggcatctaaataactaaaatataaaaATAAGa > 2:1921699‑M1/86‑91 (MQ=255) gATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGAt < 2:670385/91‑1 (MQ=255) attgaaaaagaaatcgaaaaaaatggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTg > 2:1629292‑M1/83‑91 (MQ=255) aTCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGaa < 2:828419/91‑1 (MQ=255) tCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGaaa > 2:2384390/1‑91 (MQ=255) tCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGaaa > 2:454696/1‑91 (MQ=255) aTACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCa > 2:2815683/1‑91 (MQ=255) aTACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCa > 2:1965981/1‑91 (MQ=255) aTACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTATTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCa > 1:3734501/1‑91 (MQ=255) tACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCaa < 1:2466246/91‑1 (MQ=255) tACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCaa > 2:3326565/1‑91 (MQ=255) cACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGAt > 1:851274/1‑91 (MQ=255) aCTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATg > 1:1197164/1‑91 (MQ=255) tttttCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGAc > 1:349965/1‑91 (MQ=255) cAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTcc < 1:1778231/91‑1 (MQ=255) aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCa < 2:944372/91‑1 (MQ=255) aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCa > 2:1111149/1‑91 (MQ=255) aTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCaa > 1:1406554/1‑91 (MQ=255) aTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCaa > 2:1427112/1‑91 (MQ=255) aTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCaa > 2:318666/1‑91 (MQ=255) tAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAAt > 1:2700109/1‑91 (MQ=255) atggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAAt > 2:2189342‑M1/61‑91 (MQ=255) ggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaAt > 1:484637‑M1/59‑60 (MQ=255) ggcggcaaaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaAt < 2:488051‑M1/2‑1 (MQ=255) aaaaaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCt < 1:1642778/91‑1 (MQ=255) gagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttt > 2:873475/1‑91 (MQ=255) agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt > 1:344839/1‑91 (MQ=255) agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt > 1:2212368/1‑91 (MQ=255) gTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt < 1:3856132/91‑1 (MQ=255) aaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt > 2:1866476‑M1/52‑91 (MQ=255) aaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt > 2:1991320‑M1/52‑91 (MQ=255) aaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt > 1:3828701‑M1/52‑91 (MQ=255) tGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTta < 1:3348058/91‑1 (MQ=255) tGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTACTCCAATGATAAGATTGAAAGGCAAGATGACCATCCAATCTTATTTTta > 2:3711241/1‑91 (MQ=255) aatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTta > 1:2566182‑M1/51‑91 (MQ=255) ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat < 1:1633860/91‑1 (MQ=255) gTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtata > 2:3070001/1‑91 (MQ=255) aGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAtt > 2:122073/1‑91 (MQ=255) gATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAttt < 1:1083754/91‑1 (MQ=255) gaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTa > 2:68773‑M1/44‑91 (MQ=255) cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt > 2:1995220/1‑91 (MQ=255) cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt < 1:1026835/91‑1 (MQ=255) tcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGtt > 1:452862‑M1/41‑91 (MQ=255) aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa > 1:36513/1‑91 (MQ=255) aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa > 2:1127475/1‑91 (MQ=255) aaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAt < 1:1483594/91‑1 (MQ=255) aCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGATAtt > 1:3235693/1‑91 (MQ=255) cAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAttt > 1:2857748/1‑91 (MQ=255) cAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCGTATTTTTATATTTTAGTTAttt > 1:297916/1‑91 (MQ=255) aaaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTa > 1:132956/1‑91 (MQ=255) aaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAg < 2:2864726/91‑1 (MQ=255) aTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGa > 2:3546286/1‑91 (MQ=255) tGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGAt < 2:2835249/91‑1 (MQ=255) gTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATg > 1:2882215/1‑91 (MQ=255) gTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTCCTTTTTATATCTTAGTTATTTAGATg > 2:3359628/1‑91 (MQ=255) ttttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAAGCTTATTTTTATATTTTAGTTATTTAGATGCCtttt < 1:1256647/91‑1 (MQ=255) tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt > 1:2267712/1‑91 (MQ=255) tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt < 1:3697131/91‑1 (MQ=255) tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt > 2:55160/1‑91 (MQ=255) tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt > 2:1555105/1‑91 (MQ=255) tCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTa < 2:1878889/91‑1 (MQ=255) tCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTa < 2:3520273/91‑1 (MQ=255) ttAACCACTCCTCCAATGATAAGATTGAAAGGCGAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAt < 1:3153477/91‑1 (MQ=255) ttAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAt < 1:552180/91‑1 (MQ=255) tAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAtt < 1:197342/91‑1 (MQ=255) aCTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTc < 1:3063310/91‑1 (MQ=255) aCTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTc > 2:634706/1‑91 (MQ=255) aCTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCC‑TTTTTAAAATTGATTCa > 1:2233331/1‑91 (MQ=255) aCTCCTCCAATGATAAGATAGAAAGGCAATATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTc > 2:3387587/1‑91 (MQ=255) ctcctcCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCa > 1:903566/1‑91 (MQ=255) tcctccAATGATAATATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaa < 2:2334664/91‑1 (MQ=255) tcctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaa < 1:664849/91‑1 (MQ=255) cctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaaa > 1:590054/1‑91 (MQ=255) tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa < 1:1498785/91‑1 (MQ=255) ccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAt < 2:3012286/91‑1 (MQ=255) ccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAt > 2:1894734/1‑91 (MQ=255) aaTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAttt > 1:1446132/1‑91 (MQ=255) tGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTg > 2:3623888/1‑91 (MQ=255) gATAAGAATGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgc < 2:3451068/91‑1 (MQ=255) | TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGC > USA300TCH1516_ALE/325925‑326104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |