BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	326015 =	176 (0.920)	20 (0.120)	13/142	NT	11.8%	intergenic (‑19/+49)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	326051 =	143 (0.850)	20 (0.120)	13/142	NT	11.8%	intergenic (‑55/+13)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein

Only 100 of 280 total aligned reads displayed.

AGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCACG  >  USA300TCH1516_ALE/325961‑326141

agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                                            >  2:3861532/1‑91 (MQ=255)

agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                                            >  1:225173/1‑91 (MQ=255)

 gagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttt                                                                                           >  2:93307/1‑91 (MQ=255)

 gagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttt                                                                                           >  2:2366270/1‑91 (MQ=255)

  agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                          <  1:2378060/91‑1 (MQ=255)

  agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                          >  1:2213087/1‑91 (MQ=255)

  agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                          <  1:422856/91‑1 (MQ=255)

   gTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                                                         <  1:3856132/91‑1 (MQ=255)

   aaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                                                         >  1:3828701‑M1/52‑91 (MQ=255)

   aaatgtttgaatcaattttaaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                                                         >  2:1866476‑M1/52‑91 (MQ=255)

    tGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTta                                                                                        >  1:2545078/1‑91 (MQ=255)

    tGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTACTCCAATGATAAGATTGAAAGGCAAGATGACCATCCAATCTTATTTTta                                                                                        >  2:3711241/1‑91 (MQ=255)

     ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                                                       <  2:759119/91‑1 (MQ=255)

     ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                                                       <  1:1633860/91‑1 (MQ=255)

         gATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAttt                                                                                   <  1:1083754/91‑1 (MQ=255)

          aTGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAtttt                                                                                  <  2:3105962/91‑1 (MQ=255)

           gaaacaaatataaaaaaggcatctaaataactaaaatataaaaATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTa                                                                                 >  2:69139‑M1/44‑91 (MQ=255)

             cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                               <  1:1026835/91‑1 (MQ=255)

             cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                               <  1:1769913/91‑1 (MQ=255)

             cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                               >  2:1994681/1‑91 (MQ=255)

                aaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAt                                                                            <  1:1484110/91‑1 (MQ=255)

                 aCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGATAtt                                                                           >  1:3235693/1‑91 (MQ=255)

                  cAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAttt                                                                          >  1:940091/1‑91 (MQ=255)

                     aTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGa                                                                       <  2:228947/91‑1 (MQ=255)

                     aTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGa                                                                       >  2:3546301/1‑91 (MQ=255)

                      tGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAACGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGAt                                                                      >  2:1592230/1‑91 (MQ=255)

                      tGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGAt                                                                      <  2:2835452/91‑1 (MQ=255)

                       gTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATg                                                                     >  1:2882215/1‑91 (MQ=255)

                           tGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCtt                                                                 <  1:3507020/91‑1 (MQ=255)

                             ttttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCtttt                                                               <  2:301814/91‑1 (MQ=255)

                              tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                              <  1:3697131/91‑1 (MQ=255)

                              tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                              >  2:55160/1‑91 (MQ=255)

                              tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                              >  1:2267712/1‑91 (MQ=255)

                                tCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTa                                                            <  2:3520273/91‑1 (MQ=255)

                                    ttAACCACTCCTCCAATGATAAGATTGAAAGGCGAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAt                                                        <  1:3153477/91‑1 (MQ=255)

                                     tAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAtt                                                       <  1:197342/91‑1 (MQ=255)

                                     tAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTCATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAAtt                                                       >  1:363792/1‑91 (MQ=255)

                                      aaCCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATCTTTTAGTTATTTAGATGCCTTTTTTAAAATTg                                                      >  2:1035367/1‑91 (MQ=255)

                                      aaCCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTg                                                      >  1:877027/1‑91 (MQ=255)

                                        ccACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTATATGCCTTTTTTAAAATTGAt                                                    >  1:2399801/1‑91 (MQ=255)

                                          aCTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTc                                                  <  2:3367600/91‑1 (MQ=255)

                                           ctcctcCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCa                                                 <  2:2066106/91‑1 (MQ=255)

                                             cctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaaa                                               >  1:590054/1‑91 (MQ=255)

                                              ctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAAc                                              >  1:1198376/1‑91 (MQ=255)

                                               tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAATTTGATTCAAACa                                             <  1:2982517/91‑1 (MQ=255)

                                                ataaaaataagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAt                                            >  2:2517443‑M2/43‑91 (MQ=255)

                                                  aaaaataagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAttt                                          >  2:1866477‑M2/41‑91 (MQ=255)

                                                  aaTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAttt                                          >  1:1446132/1‑91 (MQ=255)

                                                    tGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTg                                        >  2:3623888/1‑91 (MQ=255)

                                                     gATAAGAATGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgc                                       <  2:3451068/91‑1 (MQ=255)

                                                       taagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGACGCCTTTTTTAAAATTGATTCAAACATTTTgccg                                     >  2:1889364‑M2/36‑91 (MQ=255)

                                                       TAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccg                                     >  1:1127475‑M1/1‑91 (MQ=255)

                                                       TAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccg                                     <  2:2889784‑M1/91‑1 (MQ=255)

                                                       TAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgcc                                      <  1:1641568‑M1/90‑1 (MQ=255)

                                                        aagattggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                                    >  1:3466764‑M2/35‑91 (MQ=255)

                                                        AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                                    <  2:3669931‑M1/91‑1 (MQ=255)

                                                        AAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                                    >  1:289611‑M1/1‑91 (MQ=255)

                                                         AGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgcc                                   <  1:2572876‑M1/91‑1 (MQ=255)

                                                           attggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAt                                 >  2:2189342‑M2/32‑91 (MQ=255)

                                                            TTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtt                                <  1:2803512‑M1/91‑1 (MQ=255)

                                                              ggaaggtcatcttgcctttcaatcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTATTTTTTATTCAAACATTTTGCCGCCAtttt                              >  2:678444‑M2/29‑91 (MQ=255)

                                                                aaGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttttt                            >  1:49196/1‑91 (MQ=255)

                                                                aaGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttttt                            >  2:854196/1‑91 (MQ=255)

                                                                aaGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttttt                            <  1:1301358/91‑1 (MQ=255)

                                                                 aGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAttttttt                           >  1:3058200/1‑91 (MQ=255)

                                                                  ggCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTc                          <  2:1763384/91‑1 (MQ=255)

                                                                   gCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCg                         >  2:3393283/1‑91 (MQ=255)

                                                                   gCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCg                         <  1:640836/91‑1 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        <  1:2242193/91‑1 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        >  1:2188003/1‑91 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        >  2:116586/1‑91 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        >  2:620927/1‑91 (MQ=255)

                                                                    cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa                        <  2:3212433/91‑1 (MQ=255)

                                                                     aaGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt                       >  2:1677039/1‑91 (MQ=255)

                                                                     aaGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt                       >  2:2426413/1‑91 (MQ=255)

                                                                     aaGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt                       <  2:903383/91‑1 (MQ=255)

                                                                        aTGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTc                    <  1:691146/91‑1 (MQ=255)

                                                                        aTGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTc                    >  1:2769123/1‑91 (MQ=255)

                                                                            ccTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtttt                >  2:2998044/1‑91 (MQ=255)

                                                                            ccTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtttt                >  2:1988657/1‑91 (MQ=255)

                                                                            ccTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtttt                <  2:950842/91‑1 (MQ=255)

                                                                             cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt               <  1:1336612/91‑1 (MQ=255)

                                                                               tCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCa             <  1:620927/91‑1 (MQ=255)

                                                                               tCCAATCTTATTTTTATATTTTAGTTATTTACATGCCTTTTTTAGAATTGATTGAAAGATTTTGCCGTCATTTTTTTCGATTTCTTTTTCa             <  1:3097695/91‑1 (MQ=255)

                                                                                   atcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGtt         >  2:1709180‑M2/8‑91 (MQ=255)

                                                                                   atcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGtt         <  2:1430994‑M2/84‑1 (MQ=255)

                                                                                    tcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTTTTTTTTATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttt        >  2:1921699‑M2/7‑91 (MQ=255)

                                                                                    tcttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttt        >  2:3393779‑M2/7‑91 (MQ=255)

                                                                                     cttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGtttt       <  2:381530‑M2/86‑1 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      <  1:335281‑M2/87‑1 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      <  1:1101051‑M2/87‑1 (MQ=255)

                                                                                      ttatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGttttt      <  1:2716267‑M2/87‑1 (MQ=255)

                                                                                       tatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTTTTTTTCAAGTTTTTc     >  2:3233284‑M2/4‑91 (MQ=255)

                                                                                       tatTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTc     <  2:2126368‑M2/88‑1 (MQ=255)

                                                                                        atTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgcc                                   <  2:488051‑M2/58‑1 (MQ=255)

                                                                                        atTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCa    >  1:1869371‑M2/3‑91 (MQ=255)

                                                                                        atTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCa    >  1:842603‑M2/3‑91 (MQ=255)

                                                                                        atTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCa    <  1:454696‑M2/89‑1 (MQ=255)

                                                                                         tTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCAc   <  1:1285280‑M2/90‑1 (MQ=255)

                                                                                          ttttATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCACg  >  2:2592268/1‑91 (MQ=255)

AGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAAGTTTTTCACG  >  USA300TCH1516_ALE/325961‑326141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.