| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 344445 | 212 (1.110) | 20 (0.130) +ACATTAAGATAGTTTA |
8/128 | NT | 10.7% | intergenic (+44/‑164) | yezG_1/USA300HOU_RS01545 | putative antitoxin YezG/hypothetical protein |
| ? | USA300TCH1516_ALE | = 348041 | 206 (1.080) | coding (288/300 nt) | yezG_1 | putative antitoxin YezG | |||||
TAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCT‑‑‑TTGTTTAGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/344362‑344445‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATCTTGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATATTCCGTTTCTGGTAAAATTCCA < USA300TCH1516_ALE/348041‑347966 |||||||||||||||| TAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAAC‑‑‑AAAGCTTTATTGTTTAGTCTTACATTAA < 1:467791/91‑1 TCTTAATGTAAGATTAAACAATAAAGCT‑‑‑TTGTTTAATCTTACATTAAGATTGTCTATTCTTCTTGCTCTTTAATATATTGCTCGATTTCTT > 1:167801/1‑91 GTAAGATTAAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATTGTCTATTCTTCTTGCTCTTTAATATATTGCTCGATTTCTTTAACctc > 2:3704688/1‑88 GTAAGACTAAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTT > 2:922951/1‑91 AAGACTAAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTAT > 2:2925197/1‑91 TAAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATT > 2:2261026/1‑91 TAAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATT > 2:301636/1‑91 AAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTT > 1:1861593/1‑91 AAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTT > 2:2320755/1‑91 AAACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTACTCTTCTAGCTCTTTCATATATTGCTCGATTTCTTTAACTTTATTAATTT > 2:3555164/1‑91 AACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATCTTGCTCGATTTCTTTAACTTTATTAATTTC > 1:365946/1‑91 AACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTC > 1:1101546/1‑91 AACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTC > 2:2905090/1‑91 ACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCA > 2:1008477/1‑91 ACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCA > 2:1008391/1‑91 ACAATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTCTATTCTTCTAGCTCTTTACTCTATTTCTCGATTTCTTTAACTTTATTAATTTCA > 2:772280/1‑91 AATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTCTTCTTCTAGCTCTTTAATATTTTGCTCGATTTCTTTAACTTTATTAATTTCATA > 2:1587562/1‑91 AATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATA > 2:2894984/1‑91 AATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATA > 2:410837/1‑91 ATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATAT > 2:389102/1‑91 ATAAAGCT‑‑‑TTGTTTAGTCTTACATTAAGATAGTTTATTCTTCTAGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATAT > 2:597652/1‑91 CATTTAGATTGTTTATTCTTCTTGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATATTCCGTTTCTGGTAAAATTCCA < 2:552210/91‑1 |||||||||||||||| TAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAATAAACTATCTTAATGTAAGACTAAACAATAAAGCT‑‑‑TTGTTTAGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/344362‑344445‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATCTTGCTCTTTAATATATTGCTCGATTTCTTTAACTTTATTAATTTCATATTCCGTTTCTGGTAAAATTCCA < USA300TCH1516_ALE/348041‑347966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |