BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 344445	212 (1.110)	20 (0.130) +ACATTAAGATAGTTTA	8/128	NT	10.7%	intergenic (+44/‑164)	yezG_1/USA300HOU_RS01545	putative antitoxin YezG/hypothetical protein
*	?	USA300TCH1516_ALE	= 348041	206 (1.080)	20 (0.130) +ACATTAAGATAGTTTA	8/128	NT	10.7%	coding (288/300 nt)	yezG_1	putative antitoxin YezG

Only 100 of 256 total aligned reads displayed.

AAGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATACC  >  USA300TCH1516_ALE/347952‑348131

aaGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAg                                                                                           >  1:1032123/1‑91 (MQ=39)

aaGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAg                                                                                           <  1:1548958/91‑1 (MQ=39)

 aGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAATAAATCGAGCAATATATTAAAGAGCAAGATGAAGc                                                                                          <  1:817904/91‑1 (MQ=255)

    ataGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGa                                                                                       <  1:1183241/91‑1 (MQ=39)

    ataGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGa                                                                                       <  2:1310932/91‑1 (MQ=39)

      aGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAAc                                                                                     >  2:334164/1‑91 (MQ=39)

      aGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAAc                                                                                     >  2:3178068/1‑91 (MQ=39)

      aGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAAc                                                                                     >  2:2900259/1‑91 (MQ=39)

      aGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAAc                                                                                     >  2:2782816/1‑91 (MQ=39)

        aaaaTTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACta                                                                                   <  2:3449855/91‑1 (MQ=255)

         aaaTTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACtat                                                                                  <  2:631288/91‑1 (MQ=255)

           aTTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAg                                                                                >  1:274911/1‑91 (MQ=255)

            tttGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAgg                                                                               <  2:3628197/91‑1 (MQ=255)

               ggAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGc                                                                            <  2:2598047/91‑1 (MQ=255)

               ggAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGc                                                                            <  2:1827222/91‑1 (MQ=255)

                gAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCg                                                                           <  2:1904706/91‑1 (MQ=255)

                  aTTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGat                                                                         >  2:3081860/1‑91 (MQ=255)

                   ttttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGata                                                                        <  2:2266908/91‑1 (MQ=255)

                   ttttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGata                                                                        <  2:2501007/91‑1 (MQ=255)

                   ttttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGata                                                                        >  2:1229483/1‑91 (MQ=255)

                   ttttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGata                                                                        <  2:1273020/91‑1 (MQ=255)

                   ttttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGata                                                                        >  1:1189457/1‑91 (MQ=255)

                   ttttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGata                                                                        >  1:1709006/1‑91 (MQ=255)

                     ttACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGataat                                                                      <  2:1931239/91‑1 (MQ=255)

                     ttACCAGAAACGGAATATGAAATTAATAAAGTGAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGataat                                                                      <  2:1164377/91‑1 (MQ=255)

                       aCCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAatat                                                                    <  2:723051/91‑1 (MQ=255)

                       aCCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAatat                                                                    >  2:517057/1‑91 (MQ=255)

                        ccAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGATCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGCGCGATAATATg                                                                   >  2:2951393/1‑91 (MQ=255)

                        ccAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATg                                                                   <  1:409386/91‑1 (MQ=255)

                          aGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGAc                                                                 >  1:1266417/1‑91 (MQ=255)

                          aGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGAc                                                                 >  2:583723/1‑91 (MQ=255)

                           gAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACt                                                                <  2:3791099/91‑1 (MQ=255)

                            aaaCGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACtt                                                               >  1:2042820/1‑91 (MQ=255)

                               cGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCg                                                            <  2:3522554/91‑1 (MQ=255)

                                ggAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCga                                                           <  1:3039936/91‑1 (MQ=255)

                                 gAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCgaa                                                          >  2:1368222/1‑91 (MQ=255)

                                  aaTATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCgaag                                                         >  2:2192810/1‑91 (MQ=255)

                                  aaTATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCgaag                                                         >  2:1488678/1‑91 (MQ=255)

                                   atatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttat                                                        >  2:389102‑M2/1‑55 (MQ=255)

                                   atatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCgaaga                                                        >  1:2679006/1‑91 (MQ=255)

                                    tatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttatt                                                       >  2:2894984‑M2/1‑54 (MQ=255)

                                    tatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCgaagaa                                                       >  2:419150/1‑91 (MQ=255)

                                    tatGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCgaagaa                                                       <  1:2933928/91‑1 (MQ=255)

                                    tatGAAATTAATAAAGTTAAAGAAATCGAGCAAAATATTAAAGAGCTAGAAGAAgaaactatcttaatgtaagactaaacaaagctttatt                                                       >  2:1587562‑M2/1‑54 (MQ=255)

                                     atGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGaaa                                                      <  1:1909632/91‑1 (MQ=255)

                                     atGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGaaa                                                      >  2:1451427/1‑91 (MQ=255)

                                      tGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgt                                                     >  2:1008391‑M2/1‑52 (MQ=255)

                                      tGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGaaaa                                                     >  1:3670637/1‑91 (MQ=255)

                                      tGAAATTAATAAAGTTAAAGAAATCGAGAAATAGAGTAAAGAGCTAGAAGAAtagactatcttaatgtaagactaaacaaagctttattgt                                                     >  2:772280‑M2/1‑52 (MQ=255)

                                       gAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgtt                                                    >  1:1101546‑M2/1‑51 (MQ=255)

                                        aaaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgttt                                                   >  1:1861593‑M2/1‑50 (MQ=255)

                                         aaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgttta                                                  >  2:301636‑M2/1‑49 (MQ=255)

                                         aaTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAAtt                                                  <  2:871683/91‑1 (MQ=255)

                                          aTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTa                                                 >  1:2123151/1‑91 (MQ=255)

                                          aTTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTa                                                 >  1:2091395/1‑91 (MQ=255)

                                            taataaAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAg                                               <  1:3345146/91‑1 (MQ=255)

                                              ataaAGTTAAAGAAATCGAGCAATATATTAAAGAGCTAGAAGAAtaaactatcttaatgtaagactaaacaaagctttattgtttagtctt                                             >  2:2925197‑M2/1‑44 (MQ=255)

                                              ataaAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTg                                             <  1:2473025/91‑1 (MQ=255)

                                                 aaGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAACAATTAAGtaatt                                          >  2:3231281/1‑87 (MQ=255)

                                                  aGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAAt                                         >  2:2818454/1‑91 (MQ=255)

                                                    ttAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGt                                       <  1:587418/91‑1 (MQ=255)

                                                       aaGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGtata                                    >  2:3094242/1‑91 (MQ=255)

                                                        agagATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAg                                   <  1:3120927/91‑1 (MQ=255)

                                                         gAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGc                                  >  1:1283792/1‑91 (MQ=255)

                                                           aaTCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCga                                >  1:2269767/1‑91 (MQ=255)

                                                            aTCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCgag                               <  2:434584/91‑1 (MQ=255)

                                                               gAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGAtt                            >  1:3406698/1‑91 (MQ=255)

                                                                aGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTg                           <  1:3819811/91‑1 (MQ=255)

                                                                aGCAATATATTAAAGAGCAAGATGAAGCAGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTg                           <  2:3718072/91‑1 (MQ=255)

                                                                 gCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGc                          >  1:3669354/1‑91 (MQ=255)

                                                                  cAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCg                         <  2:1891412/91‑1 (MQ=255)

                                                                  cAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCg                         <  1:473105/91‑1 (MQ=255)

                                                                      atatTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATa                     <  2:933378/91‑1 (MQ=255)

                                                                      atatTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATa                     >  2:1700953/1‑91 (MQ=255)

                                                                        atTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAg                   <  1:2218872/91‑1 (MQ=255)

                                                                        atTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAg                   >  1:2369890/1‑91 (MQ=255)

                                                                         ttAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGACATGTATAGCGAGATTGCGAATAAGa                  >  1:3598972/1‑91 (MQ=255)

                                                                         ttAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGa                  >  2:1110822/1‑91 (MQ=255)

                                                                         ttAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGa                  <  2:3377240/91‑1 (MQ=255)

                                                                         ttAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGa                  >  2:3214981/1‑91 (MQ=255)

                                                                          tAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGAAAAAAAAAAAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGat                 <  2:2718452/91‑1 (MQ=21)

                                                                           aaaGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGatt                >  2:3256217/1‑91 (MQ=255)

                                                                           aaaGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGatt                <  1:3793380/91‑1 (MQ=255)

                                                                            aaGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGatta               <  2:2221981/91‑1 (MQ=255)

                                                                            aaGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGatta               >  1:1654507/1‑91 (MQ=255)

                                                                                gCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAg           >  2:1766195/1‑91 (MQ=255)

                                                                                 cAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGc          <  1:945185/91‑1 (MQ=255)

                                                                                 cAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGc          <  1:177459/91‑1 (MQ=255)

                                                                                   aGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCAt        >  1:644030/1‑91 (MQ=255)

                                                                                   aGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCAt        >  1:1460655/1‑91 (MQ=255)

                                                                                   aGATGAAGCTGAACTATAGGGGCGATAATACGACTTTCGAAGAAAAATTAGGTGAAATTTATAGCGAGATTGCGAATAAGATTATTAGCAt        <  1:1422078/91‑1 (MQ=255)

                                                                                    gATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATg       <  1:939080/91‑1 (MQ=255)

                                                                                     aTGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      <  2:2050464/91‑1 (MQ=255)

                                                                                     aTGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      >  1:2427486/1‑91 (MQ=255)

                                                                                     aTGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      >  1:2336170/1‑91 (MQ=255)

                                                                                     aTGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGa      >  1:1397672/1‑91 (MQ=255)

                                                                                      tGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGAt     <  2:2139989/91‑1 (MQ=255)

                                                                                      tGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGAt     <  1:280755/91‑1 (MQ=255)

                                                                                       gAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATa    >  2:1423881/1‑91 (MQ=255)

                                                                                        aaGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGAATAGCGAGATTGCGAATAAGATTATTAGCATg       >  1:2583879/1‑87 (MQ=255)

AAGTATAGAAAATTTGGAATTTTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGAGCAATATATTAAAGAGCAAGATGAAGCTGAACTATAGGGGCGATAATATGACTTTCGAAGAAAAATTAAGTGAAATGTATAGCGAGATTGCGAATAAGATTATTAGCATGATACC  >  USA300TCH1516_ALE/347952‑348131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.