| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 356004 | 159 (0.830) | 16 (0.090) | 10/148 | NT | 9.4% | coding (696/1308 nt) | brnQ_2 | Branched‑chain amino acid transport system 2 carrier protein |
| ? | USA300TCH1516_ALE | = 356029 | 160 (0.910) | coding (671/1308 nt) | brnQ_2 | Branched‑chain amino acid transport system 2 carrier protein | |||||
TTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/355909‑356004‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatatgTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAACT < USA300TCH1516_ALE/356029‑355940 TTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTA < 2:1579311/91‑1TTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTA < 1:1799196/91‑1 TACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATA < 1:3153130/91‑1 ACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATAT < 2:3557546/91‑1 ACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATAT < 2:3674665/91‑1 ACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATAT < 2:3674695/91‑1 ACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATAT < 2:3675437/91‑1 CGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATG < 1:592225/91‑1 CGTCAATATATCTGTACCACCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATG > 1:2306733/1‑91 CCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCT < 2:238149/91‑1 CATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTT < 2:2677657/91‑1 TCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTAT < 2:1631036/91‑1 TCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTAT < 2:1631443/91‑1 AAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAGTCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAG < 1:3355822/91‑1 AAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAG < 2:228658/91‑1 AAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGC < 2:1034922/91‑1 AGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCC < 2:374964/91‑1 AGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCC < 2:2996434/91‑1 AGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCC < 1:2438449/91‑1 AGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCC < 1:2358401/91‑1 GTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCCA < 1:1280445/91‑1 TTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCCAT < 1:2100526/91‑1 TTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCCAT < 1:2100009/91‑1 TTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCCATA < 1:132688/91‑1 TCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGTCTGCTTTTCAGGTCTTATTGCAGCCATAT < 1:2624479/91‑1 AATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGG > 1:3035266/1‑91 AATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGG < 2:3545864/91‑1 AATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGG < 1:3758651/91‑1 AATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGG > 1:1721498/1‑91 ATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGA > 2:2832971/1‑91 ATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGA < 2:577529/91‑1 ATATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGA < 1:1129856/91‑1 ATATGTCTGCTTTTCAGGTCTTAGTGCAGCCATATTACTTGGAATGATATACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGA < 2:3264705/91‑1 TATGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAA > 1:2912569/1‑91 TGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAAC < 2:1113047/91‑1 TGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAAC > 1:1846339/1‑91 TGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAAC > 1:1825363/1‑91 TGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAAC > 1:1825167/1‑91 TGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAAC < 1:1688878/91‑1 TGTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAAC > 1:1002218/1‑91 GTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAACT > 2:1163646/1‑91 GTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAACT > 2:1163357/1‑91 TTGTACGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/355909‑356004‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatatgTCTGCTTTTCAGGTCTTATTGCAGCCATATTACTTGGAATGATTTACTTTGCACTTGCATACGTTGGGGCATCAACAGCTCCAGGAAACT < USA300TCH1516_ALE/356029‑355940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |