BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 356004	159 (0.830)	16 (0.090)	10/148	NT	9.4%	coding (696/1308 nt)	brnQ_2	Branched‑chain amino acid transport system 2 carrier protein
*	?	USA300TCH1516_ALE	= 356029	160 (0.910)	16 (0.090)	10/148	NT	9.4%	coding (671/1308 nt)	brnQ_2	Branched‑chain amino acid transport system 2 carrier protein

Only 100 of 214 total aligned reads displayed.

AAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGCAACAAGAT  >  USA300TCH1516_ALE/355939‑356119

aaGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGa                                                                                            >  2:1662344/1‑91 (MQ=255)

 aGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAc                                                                                           >  2:1163646‑M2/1‑90 (MQ=255)

  gTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAca                                                                                          >  1:1002218‑M2/1‑89 (MQ=255)

  gTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAca                                                                                          >  1:1846339‑M2/1‑89 (MQ=255)

  gTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAca                                                                                          <  1:1688878‑M2/91‑3 (MQ=255)

     tCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTATATCATTCCAAGTAATATGGCTGCACTAAGACCTGAAAAGCAGAcatat                                                                                       <  2:3264705‑M2/91‑6 (MQ=255)

      ccTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAcatatt                                                                                      <  1:3758651‑M2/91‑7 (MQ=255)

      ccTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAcatatt                                                                                      <  2:3545864‑M2/91‑7 (MQ=255)

       cTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATAttt                                                                                     <  2:2484116/91‑1 (MQ=255)

          gAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaa                                                                                  >  1:2233004/1‑91 (MQ=255)

          gAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaa                                                                                  <  2:1331309/91‑1 (MQ=255)

           aGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaaa                                                                                 <  1:2301309/91‑1 (MQ=255)

            gCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaaaa                                                                                >  1:2938591/1‑91 (MQ=255)

            gCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaaaa                                                                                >  1:297793/1‑91 (MQ=255)

             cTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAAt                                                                               <  1:3641121/91‑1 (MQ=255)

               gTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAAttt                                                                             >  2:2866925/1‑91 (MQ=255)

               gTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAAttt                                                                             >  1:1962794/1‑91 (MQ=255)

                 tGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTc                                                                           >  2:2898098/1‑91 (MQ=255)

                   aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCAt                                                                         <  2:1426439/91‑1 (MQ=255)

                   aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCAt                                                                         >  1:427874/1‑91 (MQ=255)

                   aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCAt                                                                         <  2:417318/91‑1 (MQ=255)

                   aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCAt                                                                         >  2:3161094/1‑91 (MQ=255)

                   aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTCAAAATTTTCAt                                                                         >  1:2194643/1‑91 (MQ=255)

                      ccccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATACGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCg                                                                      <  1:173800/91‑1 (MQ=255)

                      ccccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCg                                                                      <  2:2118639/91‑1 (MQ=255)

                        ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt                                                                    >  2:2373849/1‑91 (MQ=255)

                        ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt                                                                    >  2:2771377/1‑91 (MQ=255)

                         cAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATc                                                                   >  1:3126162/1‑91 (MQ=255)

                           aCGTATGCAAGTACAAAGTAAATGATGCCAAGTAATAAGGCTGCAAGAAGACCTGAAAAGCAGACATATTGTAAAATTTGCATGCGATcag                                                                 <  2:514216/91‑3 (MQ=255)

                            cGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCtgt                                                                <  2:848670/91‑1 (MQ=255)

                             gTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCtgtg                                                               >  1:109952/1‑91 (MQ=255)

                               aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg                                                             >  1:2955491/1‑91 (MQ=255)

                               aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg                                                             <  2:3764793/91‑1 (MQ=255)

                               aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg                                                             >  1:130503/1‑91 (MQ=255)

                               aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg                                                             <  1:1804539/91‑1 (MQ=255)

                               aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg                                                             <  2:1384068/91‑1 (MQ=255)

                               aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg                                                             >  1:3731680/1‑91 (MQ=255)

                                tGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAgg                                                            <  2:3222254/91‑1 (MQ=255)

                                tGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAgg                                                            <  1:969262/91‑1 (MQ=255)

                                tGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAgg                                                            <  1:520679/91‑1 (MQ=255)

                                     gTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCttt                                                       <  2:1609392/91‑1 (MQ=255)

                                     gTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCttt                                                       <  1:3806660/91‑1 (MQ=255)

                                      tGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTa                                                      <  1:2000209/91‑1 (MQ=255)

                                        cAAAGTAAATCATGCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTaaa                                                    <  1:3404997/91‑1 (MQ=255)

                                        cAAAGGAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTaaa                                                    >  1:1973440/1‑91 (MQ=255)

                                         aaaGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAAc                                                   <  1:3854302/91‑1 (MQ=255)

                                         aaaGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAAc                                                   >  2:1957481/1‑91 (MQ=255)

                                             tAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtat                                               <  2:3305218/91‑1 (MQ=255)

                                              aaaTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtata                                              >  2:3331675/1‑91 (MQ=255)

                                              aaaTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtata                                              <  1:2828438/91‑1 (MQ=255)

                                              aaaTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtata                                              <  1:244393/91‑1 (MQ=255)

                                                aTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGc                                            >  1:3029622/1‑91 (MQ=255)

                                                aTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGc                                            >  1:574877/1‑91 (MQ=255)

                                                 tCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAGTTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGcc                                           <  1:3291560/91‑1 (MQ=255)

                                                 tCATTCCAAGTAATATGGCTGCAACCAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTAAGGCCTCTACACTTATAGcc                                           >  2:1254337/1‑91 (MQ=255)

                                                  cATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCa                                          >  2:1946958/1‑91 (MQ=255)

                                                  cATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCa                                          >  2:1054278/1‑91 (MQ=255)

                                                   aTTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCAt                                         <  1:2144211/91‑1 (MQ=255)

                                                   aTTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCAt                                         <  2:1529765/91‑1 (MQ=255)

                                                      ccAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGa                                      >  2:2433444/1‑91 (MQ=255)

                                                           tAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATg                                 >  2:2308290/1‑91 (MQ=255)

                                                             atatGGCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccagga                               <  1:2624479‑M2/91‑62 (MQ=255)

                                                             atatGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGAc                               <  1:1528419/91‑1 (MQ=255)

                                                              tatGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACt                              <  2:3454904/91‑1 (MQ=255)

                                                              tatGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACt                              <  1:3530715/91‑1 (MQ=255)

                                                               atGGCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaa                             <  1:2100009‑M2/91‑64 (MQ=255)

                                                                tGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTAc                            <  1:1158238/91‑1 (MQ=255)

                                                                tGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTAc                            >  1:3680486/1‑91 (MQ=255)

                                                                 ggCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact                           <  2:2996434‑M2/91‑66 (MQ=255)

                                                                 ggCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact                           <  1:2358401‑M2/91‑66 (MQ=255)

                                                                 ggCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACg                           >  2:2795968/1‑91 (MQ=255)

                                                                  gCTGCGATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACgg                          >  2:1792626/1‑91 (MQ=255)

                                                                  gCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaactt                          <  2:1034922‑M2/91‑67 (MQ=255)

                                                                  gCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACgg                          >  2:2203906/1‑91 (MQ=255)

                                                                   cTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaacttt                         <  2:228658‑M2/91‑68 (MQ=255)

                                                                   cTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGa                         >  1:524856/1‑91 (MQ=255)

                                                                     gCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGaaa                       >  2:743571/1‑91 (MQ=255)

                                                                     gCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGaaa                       >  2:1105314/1‑91 (MQ=255)

                                                                       aaTAAGACCTGAAAGGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGACATTGACAATGACCACGGaaaaa                     <  2:184697/91‑1 (MQ=255)

                                                                       aaTAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATACGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGaaaaa                     >  1:1821396/1‑91 (MQ=255)

                                                                        aTAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaactttaaaga                    <  2:1631443‑M2/91‑73 (MQ=255)

                                                                        aTAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAg                    <  2:155288/91‑1 (MQ=255)

                                                                        aTAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAg                    >  1:770460/1‑91 (MQ=255)

                                                                         tAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGc                   >  1:823630/1‑91 (MQ=255)

                                                                         tAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGc                   <  1:1557094/91‑1 (MQ=255)

                                                                          aaGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaactttaaagatg                  <  2:2677657‑M2/91‑75 (MQ=255)

                                                                          aaGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCt                  >  1:634702/1‑91 (MQ=255)

                                                                           aGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTa                 <  1:3091796/91‑1 (MQ=255)

                                                                            gACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTaa                >  1:1247262/1‑91 (MQ=255)

                                                                            gACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTaa                >  1:3605304/1‑91 (MQ=255)

                                                                              ccTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACg              <  1:2822912/91‑1 (MQ=255)

                                                                                 gAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACgcag           <  1:1278734/91‑1 (MQ=255)

                                                                                 gAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACgcag           >  1:3238200/1‑91 (MQ=255)

                                                                                 gAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACgcag           >  2:796888/1‑91 (MQ=255)

                                                                                     aGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGcaac       <  2:582571/91‑1 (MQ=255)

                                                                                     aGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGcaac       <  1:1026769/91‑1 (MQ=255)

                                                                                     aGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGcaac       >  1:1578913/1‑91 (MQ=255)

                                                                                         gACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGCAACAAGa   >  2:2919561/1‑91 (MQ=255)

                                                                                         gACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGCAACAAGa   <  1:1292394/91‑1 (MQ=255)

                                                                                          aCATATTTTAAAATTTTCATGCTATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGATTACGGAAAAAGCTAACGCAGCAACACGAt  >  1:594120/1‑91 (MQ=255)

AAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACGGAAAAAGCTAACGCAGCAACAAGAT  >  USA300TCH1516_ALE/355939‑356119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.