| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 356004 | 159 (0.830) | 16 (0.090) | 10/148 | NT | 9.4% | coding (696/1308 nt) | brnQ_2 | Branched‑chain amino acid transport system 2 carrier protein |
| ? | USA300TCH1516_ALE | = 356029 | 160 (0.910) | coding (671/1308 nt) | brnQ_2 | Branched‑chain amino acid transport system 2 carrier protein | |||||
Only 100 of 243 total aligned reads displayed.
CGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACG > USA300TCH1516_ALE/355914‑356094 | cGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATG < 1:592225‑M1/91‑1 (MQ=255) gTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATgg < 1:1013580/91‑1 (MQ=255) tCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGc < 2:2151997/91‑1 (MQ=255) tatatCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCa < 2:544225/91‑1 (MQ=255) tatatCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCa > 1:417318/1‑91 (MQ=255) tatCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAAt < 1:3744045/91‑1 (MQ=255) tatCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAAt > 1:3453238/1‑91 (MQ=255) atCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATa < 1:555702/91‑1 (MQ=255) tGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGa < 1:3369388/91‑1 (MQ=255) gTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGAc < 1:1683080/91‑1 (MQ=255) ccATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTg < 2:3214872/91‑1 (MQ=255) cATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGtctgcttttcaggtctt < 2:2677657‑M1/91‑18 (MQ=255) cATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGa < 2:3065781/91‑1 (MQ=255) tCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGtctgcttttcaggtcttat < 2:1631443‑M1/91‑20 (MQ=255) tCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGaaa > 1:327945/1‑91 (MQ=255) aaaGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAg > 1:3011595/1‑91 (MQ=255) aaGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCTAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGa > 2:2941842/1‑91 (MQ=255) aaGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGa > 2:1662344/1‑91 (MQ=255) gTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGtctgcttttcaggtcttattgcagcca < 1:1280445‑M1/91‑28 (MQ=255) gTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAca > 1:1825167‑M2/1‑89 (MQ=255) gTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAca < 2:1113047‑M2/91‑3 (MQ=255) ttCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGtctgcttttcaggtcttattgcagccata < 1:132688‑M1/91‑30 (MQ=255) tCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTATATCATTCCAAGTAATATGGCTGCACTAAGACCTGAAAAGCAGAcatat < 2:3264705‑M2/91‑6 (MQ=255) ccTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAcatatt < 1:3758651‑M2/91‑7 (MQ=255) ccTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGAcatatt < 2:3545864‑M2/91‑7 (MQ=255) cTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATAttt < 2:2484116/91‑1 (MQ=255) ggAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTa > 2:3789265/1‑91 (MQ=255) gAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaa < 2:1331309/91‑1 (MQ=255) gCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaaaa > 1:2938591/1‑91 (MQ=255) gCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTaaaa > 2:2062055/1‑91 (MQ=255) gTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAAttt > 2:2866925/1‑91 (MQ=255) gTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAAttt < 2:1564207/91‑1 (MQ=255) gTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAAttt > 1:1962794/1‑91 (MQ=255) tGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTc > 2:2898098/1‑91 (MQ=255) aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCAt > 2:3161094/1‑91 (MQ=255) aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCAt < 1:1913108/91‑1 (MQ=255) aTGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTCAAAATTTTCAt > 1:2194643/1‑91 (MQ=255) tGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATg > 2:1540618/1‑91 (MQ=255) gCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGc > 1:2309518/1‑91 (MQ=255) ccccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATACGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCg < 1:173800/91‑1 (MQ=255) cccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGa > 2:1101651/1‑91 (MQ=255) ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt < 1:1988102/91‑1 (MQ=255) ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt > 2:2373849/1‑91 (MQ=255) ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt > 2:2771377/1‑91 (MQ=255) ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt > 1:3757263/1‑91 (MQ=255) ccAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGAt < 1:129468/91‑1 (MQ=255) cAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATc > 1:3126162/1‑91 (MQ=255) aCGTATGCAAGTACAAAGTAAATGATGCCAAGTAATAAGGCTGCAAGAAGACCTGAAAAGCAGACATATTGTAAAATTTGCATGCGATcag < 2:514216/91‑3 (MQ=255) cGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCtgt < 2:848670/91‑1 (MQ=255) cGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCtgt > 1:2014524/1‑91 (MQ=255) gTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCtgtg < 1:422910/91‑1 (MQ=255) aTGCAAGTGCAAAGTAAATCATTCCGAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg < 1:3757673/91‑1 (MQ=255) aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg > 1:2955491/1‑91 (MQ=255) aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg < 1:1227175/91‑1 (MQ=255) aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg > 1:225457/1‑91 (MQ=255) aTGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAg < 2:1384068/91‑1 (MQ=255) tGCAAGTGCAAAGTAAATCATTCCCAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAgg > 2:3263569/1‑91 (MQ=255) tGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAgg < 1:969279/91‑1 (MQ=255) tGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAgg < 1:520679/91‑1 (MQ=255) gTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCttt < 1:3806660/91‑1 (MQ=255) gTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCttt < 2:1609392/91‑1 (MQ=255) aaaGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAAc > 2:1957481/1‑91 (MQ=255) aaGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACt > 2:746959/1‑91 (MQ=255) gTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTta < 2:1201032/91‑1 (MQ=255) tAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtat < 1:2482845/91‑1 (MQ=255) tAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtat < 2:3305218/91‑1 (MQ=255) aaaTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTtata > 2:3331675/1‑91 (MQ=255) aaaTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATATTCATGCGATCTGTGAGGCCTTTAAACTtata > 2:1911988/1‑91 (MQ=255) aTCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGc > 1:574877/1‑91 (MQ=255) cATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCa > 1:801362/1‑91 (MQ=255) cATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCa > 1:2197696/1‑91 (MQ=255) aTTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCAt < 1:3200512/91‑1 (MQ=255) tCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTg > 2:1038258/1‑91 (MQ=255) ccAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGa > 2:2433457/1‑91 (MQ=255) ccAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGa > 1:914422/1‑91 (MQ=255) ccAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGa > 1:155668/1‑91 (MQ=255) cAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGAc < 1:3611010/91‑1 (MQ=255) tAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATg > 2:2308290/1‑91 (MQ=255) aaTATGtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccagg > 1:3035266‑M1/1‑6 (MQ=255) aaTATGtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccagg > 1:1721498‑M1/1‑6 (MQ=255) aaTATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGa > 2:3539371/1‑91 (MQ=255) atatGtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccagga < 1:1129856‑M1/91‑87 (MQ=255) atatGGCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccagga < 1:2624479‑M2/91‑62 (MQ=255) atatGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGAc < 1:1528419/91‑1 (MQ=255) tatGtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaa > 1:2912569‑M1/1‑4 (MQ=255) tatGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACt < 2:3454904/91‑1 (MQ=255) tatGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACt < 1:2828267/91‑1 (MQ=255) atGGCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaa < 1:2100526‑M2/91‑64 (MQ=255) atGGCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaa < 1:2100009‑M2/91‑64 (MQ=255) tGtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaac > 1:1846339‑M1/1‑2 (MQ=255) tGtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaac > 1:1002218‑M1/1‑2 (MQ=255) tGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTAc > 1:3680486/1‑91 (MQ=255) gtctgcttttcaggtcttattgcagccatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact > 2:1163646‑M1/1‑1 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact < 2:2996434‑M2/91‑66 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact < 1:2358401‑M2/91‑66 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact < 1:2438449‑M2/91‑66 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGAcatattacttggaatgatttactttgcacttgcatacgttggggcatcaacagctccaggaaact < 2:374964‑M2/91‑66 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGACTTATTTTAAAATTTGCAGGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACg < 2:1474238/91‑1 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACg > 2:2795968/1‑91 (MQ=255) ggCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACg > 1:1815223/1‑91 (MQ=255) | CGTCAATATATCTGTACCATCTTTAAAGTTTCCTGGAGCTGTTGATGCCCCAACGTATGCAAGTGCAAAGTAAATCATTCCAAGTAATATGGCTGCAATAAGACCTGAAAAGCAGACATATTTTAAAATTTTCATGCGATCTGTGAGGCCTTTAAACTTATAGCCATTGACAATGACTACG > USA300TCH1516_ALE/355914‑356094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |