| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 393597 | 136 (0.710) | 11 (0.070) | 6/142 | NT | 7.9% | intergenic (+20/+40) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 393621 | 135 (0.800) | intergenic (+44/+16) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/393499‑393597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacgctcAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT < USA300TCH1516_ALE/393621‑393532 GTTTGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA > 1:2358249/1‑91GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAACAATA > 1:3232113/1‑91GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA > 2:2540821/1‑91 TTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACATGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAA < 2:3419590/91‑1 TTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAA < 2:1341238/91‑1 TTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAA < 1:3859179/91‑1 TGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAG > 2:3254579/1‑91 TGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAG < 1:2371416/91‑1 GGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGA > 1:3752058/1‑91 GGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGA < 1:1397630/91‑1 GGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGA > 2:3637581/1‑91 GCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGAC > 2:439158/1‑91 GCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGAC > 2:2263409/1‑91 GCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGAC > 1:2249282/1‑91 GCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGA < 1:1086947/90‑1 GCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGA > 2:1086947/1‑90 CACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG < 1:970804/91‑1 CACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG > 2:694380/1‑91 CACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG > 2:47239/1‑91 ACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGC > 1:2949084/1‑91 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCc > 2:1989349/1‑90 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 2:3513146/1‑91 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT < 1:647597/91‑1 AATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTC > 2:2008062/1‑91 TACGACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCC < 1:3126021/91‑1 TACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCC < 1:3840703/91‑1 TACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCC < 2:1970987/91‑1 ACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:1827072/91‑1 ACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:1291704/91‑1 ACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:722429/91‑1 ACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:2347971/91‑1 AAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT < 2:3752058/91‑1 AGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTA < 1:989463/91‑1 GTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTAT < 1:76325/91‑1 GAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTAT < 1:2935749/91‑1 agAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACAC < 1:190091/89‑1 AAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTT > 1:3676565/1‑91 AGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTG > 2:2032089/1‑91 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTT > 2:973071/1‑91 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTACTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTT > 2:3186759/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG > 1:106743/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTT < 1:2846396/87‑1 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTT > 2:2846396/1‑87 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGT < 2:3779212/91‑1 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGT < 1:2764585/91‑1 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGT > 2:1642454/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT > 1:392779/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT > 1:439158/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 2:946272/91‑1 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT > 2:2358249/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 1:3173815/91‑1 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 1:32967/91‑1 CTCAAACACTTACAAATGTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 1:3322257/91‑1 CTCAAACACTTACAAATGTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 1:3323810/91‑1 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG > 2:80932/1‑91 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG < 1:1284082/91‑1 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG < 1:1325105/91‑1 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG > 1:2913713/1‑91 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG > 1:152589/1‑91 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG < 1:1676337/91‑1 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG > 1:2913828/1‑91 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG > 2:2424207/1‑91 CAAACACTTACAAATTTAGTGTGCCGTGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT > 1:1208705/1‑91 CAAACACTTACAAACTTAGTGTGCCGAGCGCCTTATTTTTATACTTTAAAAGTCGTATTGGTCGTTTTCTTCTTCAAACACTTGTTGTTGT > 2:1257384/1‑91 GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/393499‑393597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacgctcAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT < USA300TCH1516_ALE/393621‑393532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |