| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 412131 = | 181 (0.950) | 13 (0.080) | 8/144 | NT | 7.6% | coding (1028/1161 nt) | metC | Cystathionine beta‑lyase MetC |
| ? | USA300TCH1516_ALE | 412165 = | 152 (0.890) | coding (994/1161 nt) | metC | Cystathionine beta‑lyase MetC | |||||
ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/412228‑412131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > USA300TCH1516_ALE/412165‑412254 ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG < 2:2690566/91‑1ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG > 1:1717581/1‑91ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG < 1:2935501/91‑1ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG < 1:2934362/91‑1ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG < 1:2934318/91‑1ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG < 1:2934296/91‑1ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAG < 1:2934200/91‑1 CATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGT > 1:3475035/1‑91 TTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGA < 1:933585/91‑1 TTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGA > 1:452514/1‑91 TTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGA > 2:2651029/1‑91 TACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAG < 2:1346918/91‑1 ACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGA > 1:735012/1‑91 ACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGA > 1:2355017/1‑91 ACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGA > 1:2354989/1‑91 CCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGAC < 1:2808870/91‑1 CCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGAC < 1:988150/91‑1 CCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGAC < 1:184809/91‑1 CCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGAC < 1:1228493/91‑1 CACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA > 1:3504227/1‑91 ATGTCTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGT > 1:3657884/1‑91 GTCTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGCGG > 2:2715190/1‑91 TCTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGT > 1:2019426/1‑91 CTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTA > 1:2411605/1‑91 CTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTA > 1:1616618/1‑91 CTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTA > 1:2961101/1‑91 CTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACCCACTGAAACGAGTGGTA > 2:3769755/1‑91 TCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAA > 2:3463095/1‑91 TCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAA > 2:204327/1‑91 CACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAAT > 1:2514113/1‑91 CGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGT > 1:2550112/1‑91 CGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGT > 1:2548278/1‑91 CACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTG > 1:3299251/1‑91 GTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGT < 2:2040574/91‑1 GAGACATTGTTGGTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG > 1:2990643/1‑91 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG > 2:276085/1‑91 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG < 2:2061475/91‑1 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG < 2:2061765/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT < 2:3532431/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT < 2:2051290/91‑1 AGACATTGTTGCTGGATCTGAAAGGATCGTTTGAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCGTCGACAAATTGTTGT < 1:3315930/91‑1 GACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTG > 2:1568892/1‑91 ACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGC > 1:2999744/1‑91 ACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGC < 2:2901610/91‑1 ACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGC < 1:1200317/91‑1 CATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCT > 2:75417/1‑91 CATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACCCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCT > 2:75696/1‑91 ATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > 2:3179328/1‑91 ACATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/412228‑412131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > USA300TCH1516_ALE/412165‑412254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |