BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	412131 =	181 (0.950)	13 (0.080)	8/144	NT	7.6%	coding (1028/1161 nt)	metC	Cystathionine beta‑lyase MetC
*	?	USA300TCH1516_ALE	412165 =	152 (0.890)	13 (0.080)	8/144	NT	7.6%	coding (994/1161 nt)	metC	Cystathionine beta‑lyase MetC

Only 100 of 226 total aligned reads displayed.

CAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTTT  >  USA300TCH1516_ALE/412075‑412255

  ggATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttg                                                                                          <  2:776619/91‑1 (MQ=255)

     tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                                                       >  1:3467982/1‑91 (MQ=255)

       ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCACCTAGTGCAGCCTGAGACATTGTTGCt                                                                                     >  2:3364777/1‑91 (MQ=255)

       ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCACATAGTGCAGCCTGAGACTTTGTTGCt                                                                                     >  2:3365078/1‑91 (MQ=255)

        tCGAGACCAACACTTAATCGTAATAGACCGAAAGTGATACCACGTTCTTGTCGCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                                                    <  2:73021/91‑1 (MQ=255)

        tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgtt                                                                                        <  2:3331581/87‑1 (MQ=255)

        tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgtt                                                                                        >  1:3331581/1‑87 (MQ=255)

        tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                                                    <  2:3532975/91‑1 (MQ=255)

         cGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTgg                                                                                   <  1:1194057/91‑1 (MQ=255)

            gaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtg                                                                                <  1:2145808/91‑1 (MQ=255)

             aCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgt                                                                               <  2:1710956/91‑1 (MQ=255)

              ccAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgtg                                                                              >  1:3146567/1‑91 (MQ=255)

              ccAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgtg                                                                              >  1:3144736/1‑91 (MQ=255)

                aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                            >  2:3147880/1‑91 (MQ=255)

                 acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           >  1:875471/1‑91 (MQ=255)

                 acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           >  2:3137359/1‑91 (MQ=255)

                 acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           >  2:1121333/1‑91 (MQ=255)

                  cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                                                          <  2:1199339/91‑1 (MQ=255)

                    cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGTGTGAGACATTGTTGCTGGATGTGAAAGGa                                                                        >  2:3183728/1‑91 (MQ=255)

                    cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGa                                                                        <  1:2876458/91‑1 (MQ=255)

                    cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGa                                                                        <  2:1900046/91‑1 (MQ=255)

                    cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCGCACTGCTTCAGGTAGGGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGa                                                                        <  2:1554618/91‑1 (MQ=255)

                      tAATCGGAATAGACCGAAAGTGATACCACGTTCTTGCCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATc                                                                      <  2:3825869/91‑1 (MQ=255)

                        aTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGt                                                                    >  2:1498518/1‑91 (MQ=255)

                         tCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGtt                                                                   >  1:705580/1‑91 (MQ=255)

                          cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                                                  >  2:1789735/1‑91 (MQ=255)

                           ggAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTc                                                                 >  2:932284/1‑91 (MQ=255)

                            gAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCa                                                                <  1:1554419/91‑1 (MQ=255)

                               tAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAaca                                                             <  2:556328/91‑1 (MQ=255)

                                 gACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACAcc                                                           >  2:1291818/1‑91 (MQ=255)

                                 gACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACAcc                                                           >  1:1219832/1‑91 (MQ=255)

                                 gACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACAcc                                                           >  2:1292192/1‑91 (MQ=255)

                                  aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                                                          >  1:1503293/1‑91 (MQ=255)

                                  aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                                                          <  1:1706847/91‑1 (MQ=255)

                                   ccGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGc                                                         <  1:3626119/91‑1 (MQ=255)

                                         gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                   >  1:1431559/1‑91 (MQ=255)

                                         gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                   >  1:3532431/1‑91 (MQ=255)

                                         gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                   >  2:885135/1‑91 (MQ=255)

                                         gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                   <  1:3839690/91‑1 (MQ=255)

                                           gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc                                                 >  1:722136/1‑91 (MQ=255)

                                            aTACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCa                                                <  2:480094/91‑1 (MQ=255)

                                             tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                               >  1:2197963/1‑91 (MQ=255)

                                               ccACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCCCTg                                             >  1:1083503/1‑91 (MQ=255)

                                               ccACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTg                                             <  2:1104731/91‑1 (MQ=255)

                                                cACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGa                                            <  1:1775957/91‑1 (MQ=255)

                                                 aCGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaa                                           <  2:428307/91‑1 (MQ=255)

                                                  cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa                                          <  2:2087647/91‑1 (MQ=255)

                                                  cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa                                          <  1:3559591/91‑1 (MQ=255)

                                                  cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa                                          >  1:2313437/1‑91 (MQ=255)

                                                    ttCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACg                                        <  2:2677169/91‑1 (MQ=255)

                                                    ttCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACg                                        >  2:1435564/1‑91 (MQ=255)

                                                      cTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAg                                      >  2:218054/1‑91 (MQ=255)

                                                       ttGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGt                                     >  1:2687449/1‑91 (MQ=255)

                                                       ttGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGt                                     >  2:1151244/1‑91 (MQ=255)

                                                       atgtctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGt                                     >  1:3657884‑M2/36‑91 (MQ=255)

                                                         GTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTgg                                   <  1:1228493‑M1/91‑1 (MQ=255)

                                                         GTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTgg                                   <  1:2808870‑M1/91‑1 (MQ=255)

                                                         GTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTgg                                   <  1:988150‑M1/91‑1 (MQ=255)

                                                          tctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGt                                  >  1:2019426‑M2/33‑91 (MQ=255)

                                                          TCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGt                                  >  1:2355017‑M1/1‑91 (MQ=255)

                                                          TCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGt                                  >  1:735012‑M1/1‑91 (MQ=255)

                                                           ctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTa                                 >  1:2961101‑M2/32‑91 (MQ=255)

                                                           ctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACCCACTGAAACGAGTGGTa                                 >  2:3769755‑M2/32‑91 (MQ=255)

                                                            tcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTaa                                >  2:3463095‑M2/31‑91 (MQ=255)

                                                            tcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTaa                                >  2:204327‑M2/31‑91 (MQ=255)

                                                            TCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTaa                                >  2:2651029‑M1/1‑91 (MQ=255)

                                                            TCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTaa                                >  1:452514‑M1/1‑91 (MQ=255)

                                                             cacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAAt                               >  1:2514113‑M2/30‑91 (MQ=255)

                                                               cgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGt                             >  1:2548278‑M2/28‑91 (MQ=255)

                                                               CTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGt                             <  1:2934362‑M1/91‑1 (MQ=255)

                                                               CTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGt                             <  1:2934200‑M1/91‑1 (MQ=255)

                                                                 tcttcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCa                           <  2:837669/91‑1 (MQ=255)

                                                                 tcttcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCa                           >  1:424391/1‑91 (MQ=255)

                                                                    tcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTg                        >  1:675154/1‑91 (MQ=255)

                                                                    tcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTg                        >  1:3253598/1‑91 (MQ=255)

                                                                    cactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTg                        >  1:3299251‑M2/23‑91 (MQ=255)

                                                                      aGGTAGTGCATCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCa                      <  2:216789/91‑1 (MQ=255)

                                                                      aGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCa                      <  2:3415836/91‑1 (MQ=255)

                                                                       ggTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCAt                     >  2:1300634/1‑91 (MQ=255)

                                                                        gTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATc                    <  2:2849533/91‑1 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGGAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  1:171994/91‑1 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  1:1606671/91‑1 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  >  1:3591415/1‑91 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGGGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  2:2172430/91‑1 (MQ=255)

                                                                           gTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGAc                 >  2:1506715/1‑91 (MQ=255)

                                                                           gTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGAc                 <  1:3416199/91‑1 (MQ=255)

                                                                            tGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACa                <  1:92768/91‑1 (MQ=255)

                                                                            tGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACa                >  1:1033635/1‑91 (MQ=255)

                                                                            tGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACa                >  2:3237279/1‑91 (MQ=255)

                                                                             gCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTACATCGACaa               <  1:1957835/91‑1 (MQ=255)

                                                                               aGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAt             <  2:705580/91‑1 (MQ=255)

                                                                               aGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAt             >  1:308385/1‑91 (MQ=255)

                                                                                gCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAtt            <  2:410063/91‑1 (MQ=255)

                                                                                gCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCACCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAtt            >  1:936686/1‑91 (MQ=255)

                                                                                gCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTGTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAtt            <  2:1965841/91‑1 (MQ=255)

                                                                                    gagacaTTGTTGGTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        >  1:2990643‑M2/7‑91 (MQ=255)

                                                                                    gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        >  2:276085‑M2/7‑91 (MQ=255)

                                                                                    gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        <  2:2061475‑M2/85‑1 (MQ=255)

                                                                                       acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc     <  2:2901610‑M2/88‑1 (MQ=255)

                                                                                        caTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACCCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCt    >  2:75696‑M2/3‑91 (MQ=255)

CAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTTT  >  USA300TCH1516_ALE/412075‑412255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.