| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 414290 = | 183 (0.960) | 16 (0.090) | 8/148 | NT | 8.4% | intergenic (‑32/‑632) | metI/spo0C | Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J |
| ? | USA300TCH1516_ALE | 414341 = | 181 (1.030) | intergenic (‑83/‑581) | metI/spo0C | Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J | |||||
TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/414385‑414290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT > USA300TCH1516_ALE/414341‑414430 TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGA < 2:3654492/91‑1TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGA < 2:1198541/91‑1 ATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAA > 1:1280961/1‑91 ATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAA > 2:2829451/1‑91 ATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAA < 2:1956880/91‑1 TTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAG < 2:2613868/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTGGGGTACGAAGGACGGAAGC < 2:3388604/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC < 1:810046/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC > 2:1869425/1‑91 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATACGATTCATTGGGGTACGAAGGACGGAAGC < 2:3387812/91‑1 CAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT > 2:928330/1‑91 CAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT > 2:796945/1‑91 CAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT > 1:3253084/1‑91 AAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCGTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTG > 1:215815/1‑91 AAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCGTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTG > 1:215895/1‑91 GCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAA > 1:538557/1‑91 CTTTCGTCCTTTTTATCCGATTCATGCGGGTACGAAGGACGGCAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAA > 2:2519283/1‑91 TCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAA > 1:3573853/1‑91 CGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAC > 1:950821/1‑91 CGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAC > 2:2732789/1‑91 CGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAC > 1:1579713/1‑91 CTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTA > 1:1096709/1‑91 CTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTA > 1:82956/1‑91 CTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTA > 1:707328/1‑91 CTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTA > 1:2116694/1‑91 TTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAT > 1:2374796/1‑91 TTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATT > 1:3640950/1‑91 TTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCCGAAATAACCTTATT > 1:3640872/1‑91 TTTTATCCGATTCATTCGGGTACGAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATT > 2:1116523/1‑91 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA > 2:2347081/1‑91 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA < 1:2732789/91‑1 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA > 2:3389319/1‑91 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA > 2:3389017/1‑91 AGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATATCCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAA > 2:2686676/1‑91 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC < 1:1351707/91‑1 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATA < 1:3410500/49‑1 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATA > 2:3410500/1‑49 GCTTATGTTTCGCGGCACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC < 2:312458/91‑1 CTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACA > 2:2833904/1‑91 CTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACA < 1:1881371/91‑1 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA < 2:2486634/91‑1 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA > 1:1538738/1‑91 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA < 2:1576431/91‑1 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA > 2:2743429/1‑91 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA > 2:1945056/1‑91 TATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT > 1:1203808/1‑91 TATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT < 1:1043905/91‑1 TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/414385‑414290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT > USA300TCH1516_ALE/414341‑414430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |