| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 492723 | 99 (0.520) | 29 (0.190) | 16/128 | NT | 24.9% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 96 (0.630) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/492618‑492723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < USA300TCH1516_ALE/492741‑492652 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA < 2:567440/91‑1TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA > 1:192738/1‑91 TCACAAGCTTAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3723811/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3345256/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:1266097/91‑1 CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAA > 2:3493061/1‑91 CACAAGCTGAAAAGTGGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGTTTGTTGTAATAGGAATTTTTGTATATGAAAAA > 1:3301551/1‑91 ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG < 2:2671306/91‑1 ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG > 1:884673/1‑91 ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG < 2:808746/91‑1 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA > 1:2786018/1‑91 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA < 2:3637685/91‑1 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 1:2787642/1‑91 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 1:3051929/1‑91 GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT > 2:16707/1‑91 TGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGG < 2:3683740/91‑1 GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT < 1:2853586/91‑1 GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGCTGTAACAGGCATTTTTGTATATGAAAAAGGATTGGc > 1:3033308/1‑90 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCACAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:3183285/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:2297813/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 1:2042325/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG < 1:576690/91‑1 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 1:3204159/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:2325151/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTAGTGATTGTTGTTATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:2325222/1‑91 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA < 1:3561635/91‑1 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA > 1:271960/1‑91 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA > 1:2898562/1‑91 GATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATG‑AAAAGGATTGGTCGAACATAGA > 2:2142546/1‑91 TCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGA < 2:624296/91‑1 CTATATTTTATGGCGGGGCTATCAAAGGCGTGATTGTTGTAATAGGAATTTTTGTATATGGAAAAGGATTGGTCGAACATAGAACATGAAG < 1:2879199/91‑1 CTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAG < 2:3663619/91‑1 TAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGT < 2:680890/91‑1 AAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTT < 2:2160904/91‑1 AATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTC < 1:3171156/91‑1 AATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTC < 1:3171145/91‑1 AATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTC < 1:3171073/91‑1 TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT < 1:1056261/91‑1 TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT < 2:1589188/91‑1 TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT < 2:616309/91‑1 TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT < 2:1589143/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 2:3126368/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 2:2549529/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 1:2591944/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 2:2118264/91‑1 TTAGGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 2:2703893/91‑1 TATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCG < 1:3788723/91‑1 TATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTGTGTATAGGAATAAGGATTGGTCGAACATAGAACATGAAGATCATTCG < 2:3608222/91‑1 ATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATG‑AAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC < 1:17990/91‑1 GGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 1:981408/91‑1 GGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 2:2087151/91‑1 GGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 1:2655957/91‑1 GGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 2:2087150/91‑1 CGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA < 1:3169963/91‑1 GTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:449773/1‑35 GTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 2:449789/35‑1 GTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 2:449773/35‑1 GTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:449789/1‑35 GTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATT < 2:2070350/91‑1 TTGTAATAGGAATTTTTGTATAAGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCTTATACAAAAATTC > 2:3770889/1‑91 TAGGAATTTTTGTATATG‑AAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTAC < 1:2142546/91‑1 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGATTTTGATA > 2:3438493/1‑91 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATA > 2:2301181/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 2:154915/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 1:2530551/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 1:2530251/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 2:2734223/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 2:2733844/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 2:2733803/1‑91 GGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCC > 2:3268036/1‑91 GGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCC > 2:901088/1‑91 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCC > 1:3576265/1‑91 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCC > 1:3578389/1‑91 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCG < 1:1134560/91‑1 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCG > 1:2443167/1‑91 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGC > 1:2075602/1‑91 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGC < 2:3457026/91‑1 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGC > 1:214122/1‑91 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGC > 1:3361395/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC > 1:3756897/1‑91 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA > 2:2311837/1‑91 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 2:185649/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 2:670005/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 2:669443/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA > 2:2311770/1‑91 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 2:185633/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT < 2:1900997/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT < 2:1305222/91‑1 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAAGCACGACTTTGATAGCCCCGCCATAA < 2:895398/91‑1 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCCATATACAAAAATTCCTATTACACCAATCACGACTCTGATAGCCCCGCCATAA < 2:895475/91‑1 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA > 1:3388581/1‑91 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < 2:2770446/91‑1 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA > 1:3191262/1‑91 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < 1:530586/91‑1 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < 1:538426/91‑1 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < 1:614331/91‑1 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < 1:1476532/91‑1 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/492618‑492723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < USA300TCH1516_ALE/492741‑492652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |