New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 49272399 (0.520)29 (0.190) 16/128 NT 24.9% intergenic (+145/+40) sle1_1/USA300HOU_RS02345 N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein
?USA300TCH1516_ALE = 492741 96 (0.630)intergenic (+163/+22) sle1_1/USA300HOU_RS02345 N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein

Only 100 of 289 total aligned reads displayed.

AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT  >  USA300TCH1516_ALE/492633‑492813
                                                                                          |                                                                                          
agttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGaa                                                                                            <  1:1898198‑M1/16‑1 (MQ=255)
aGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA                                                                                            >  1:2898562‑M1/1‑91 (MQ=255)
 gTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATAAGAAAAAGGATTGGTCGAAt                                                                                           <  2:164067/91‑1 (MQ=255)
 gTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGAATATGAAAAAGGATTGGTCGAAt                                                                                           <  2:1571317/91‑1 (MQ=255)
  ttGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATg                                                                                          <  1:1638432/91‑1 (MQ=255)
    ggATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGaa                                                                                        <  1:3044236/91‑1 (MQ=255)
      aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTACTAGGATTTTTTGTATATGAAAAAGGATTGGTCGAATGTACt                                                                                      >  1:1359840/1‑91 (MQ=255)
        tGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTc                                                                                    >  1:3126809/1‑91 (MQ=255)
          aaTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCAt                                                                                  >  1:843963/1‑91 (MQ=255)
          aaTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCAt                                                                                  <  2:3067609/91‑1 (MQ=255)
              cTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTc                                                                              <  1:650631/91‑1 (MQ=255)
                 aaTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttc                                                                           <  1:3171156‑M1/91‑18 (MQ=255)
                 aaTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTAt                                                                           <  1:2820933/91‑1 (MQ=255)
                   ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt                                                                         <  1:538426‑M2/91‑2 (MQ=255)
                    tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcatt                                                                        <  2:616309‑M1/91‑21 (MQ=255)
                    acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt                                                                        >  2:2301010‑M1/56‑91 (MQ=255)
                     ttATGGCGGGGCTATCAGAGTCGTGATTGGTGTAATAGGAATTTTTGTATATGGAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttc                                                                       <  2:895475‑M2/91‑4 (MQ=255)
                     cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc                                                                       >  1:410932‑M1/55‑91 (MQ=255)
                     cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc                                                                       >  2:2827516‑M1/55‑91 (MQ=255)
                       gtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGa                                                                     >  2:1316920‑M1/53‑91 (MQ=255)
                       aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga                                                                     <  2:1900997‑M2/91‑6 (MQ=255)
                        tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac                                                                    <  2:185649‑M2/91‑7 (MQ=255)
                        tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac                                                                    >  2:2311837‑M2/1‑85 (MQ=255)
                         ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc                                                                   >  1:3756897‑M2/1‑84 (MQ=255)
                         gctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGAcc                                                                   >  2:2103822‑M1/51‑91 (MQ=255)
                         gctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGAcc                                                                   >  1:2892261‑M1/51‑91 (MQ=255)
                          ctagattatttacaagcattcgcaaggtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCa                                                                  >  1:3620902‑M1/50‑91 (MQ=255)
                           tagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCaa                                                                 >  2:1370861‑M1/49‑91 (MQ=255)
                            ggggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaat                                                                >  1:3578389‑M2/1‑81 (MQ=255)
                               gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct                                                             >  1:2530551‑M2/1‑78 (MQ=255)
                               gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct                                                             >  2:2733844‑M2/1‑78 (MQ=255)
                                 tATCAAAATCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatccttt                                                           >  2:3438493‑M2/1‑76 (MQ=255)
                                   tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc                                                         <  1:2825911/91‑1 (MQ=255)
                                   tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc                                                         >  2:1161813/1‑91 (MQ=255)
                                    cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt                                                        >  2:946631/1‑91 (MQ=255)
                                     aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg                                                       <  1:1736770/91‑1 (MQ=255)
                                       aGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGaa                                                     >  1:2602972/1‑91 (MQ=255)
                                       aGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGaa                                                     >  1:2454168/1‑91 (MQ=255)
                                            tGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGt                                                <  2:3304313/91‑1 (MQ=255)
                                              aTTGTTGTAATAGAAATTTTTGTATATGAAAAAGGTTTGGTCGAATGAACTTCAGGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt                                              <  2:1083309/91‑1 (MQ=255)
                                               ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt                                             <  1:532870/91‑1 (MQ=255)
                                                   agtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg                                         >  2:1291115‑M1/25‑91 (MQ=255)
                                                    gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatccttttcatatacaaaaattccta                                        <  1:2142546‑M2/91‑35 (MQ=255)
                                                        tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa                                    <  1:2654687/91‑1 (MQ=255)
                                                         aGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTAc                                   <  2:2787642/91‑1 (MQ=255)
                                                           gAATTTTTGTATAAGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcttatacaaaaattcctattacaa                                 >  2:3770889‑M2/1‑50 (MQ=255)
                                                            aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaac                                <  2:2070350‑M2/91‑43 (MQ=255)
                                                            aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt                                <  2:2638870/91‑1 (MQ=255)
                                                             aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                               >  1:1154082/1‑91 (MQ=255)
                                                             aTTTTTGAACATGAAAAAGGATTGGTCGAATGTACTTCATGTTCTATGTTCGACCAATCCTGTTCTGAATAAGTATGCATGTTTTACTTTg                               <  2:3457354/91‑1 (MQ=255)
                                                               ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg                             <  2:547761/91‑1 (MQ=255)
                                                               ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg                             <  2:3691524/91‑1 (MQ=255)
                                                               ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg                             <  2:690333/91‑1 (MQ=255)
                                                                 ttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa                           <  2:2186003/91‑1 (MQ=255)
                                                                  tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                          >  1:1754909/1‑91 (MQ=255)
                                                                  tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                          <  1:1036553/91‑1 (MQ=255)
                                                                  tGTATATGAAAAAGGATTGGACGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGCATTAGTATTCATGTTTTACTTTGCGAAt                          >  1:2496185/1‑91 (MQ=255)
                                                                   gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg                         <  1:1431500/91‑1 (MQ=255)
                                                                   gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg                         >  2:415714/1‑91 (MQ=255)
                                                                    tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc                        <  1:45867/91‑1 (MQ=255)
                                                                     atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt                       >  1:1508589/1‑91 (MQ=255)
                                                                     atatGAAAAAGGATTGGTCGAATGAACTTCATGCTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt                       <  1:1252635/91‑1 (MQ=255)
                                                                      tatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCtt                      >  2:3012155/1‑91 (MQ=255)
                                                                       atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg                     <  2:1476532/91‑1 (MQ=255)
                                                                        tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt                    <  2:2902006/91‑1 (MQ=255)
                                                                          aaaaaGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTaa                  >  2:631097/1‑91 (MQ=255)
                                                                            AAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat                >  2:3234883‑M1/1‑91 (MQ=255)
                                                                              aGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagc              >  2:154915‑M1/1‑13 (MQ=255)
                                                                              aGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagc              >  1:2530251‑M1/1‑13 (MQ=255)
                                                                              aGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagc              >  2:2733803‑M1/1‑13 (MQ=255)
                                                                              AGGATTGGTGGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa              >  1:3718458‑M1/1‑91 (MQ=255)
                                                                                GATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa                           <  2:1757241‑M1/76‑1 (MQ=255)
                                                                                 agTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt           >  2:2926943‑M1/3‑91 (MQ=255)
                                                                                 aTTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagcccc           >  1:3576265‑M1/1‑10 (MQ=255)
                                                                                  ttGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccg          <  1:1134560‑M1/91‑83 (MQ=255)
                                                                                  ttGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccg          >  1:2443167‑M1/1‑9 (MQ=255)
                                                                                  ttGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccg          <  1:3169963‑M2/91‑65 (MQ=255)
                                                                                  TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa          >  1:2770446‑M1/1‑91 (MQ=255)
                                                                                   tGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgc         >  1:214122‑M1/1‑8 (MQ=255)
                                                                                   tGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgc         >  1:2075602‑M1/1‑8 (MQ=255)
                                                                                   tGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgc         >  1:3361395‑M1/1‑8 (MQ=255)
                                                                                    ggTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcc        <  2:2087150‑M2/91‑67 (MQ=255)
                                                                                    ggTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcc        <  1:2655957‑M2/91‑67 (MQ=255)
                                                                                    GGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc        >  2:530586‑M1/1‑91 (MQ=255)
                                                                                     gTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcca       >  2:2311770‑M1/1‑6 (MQ=255)
                                                                                     gTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcca       <  2:670005‑M1/91‑86 (MQ=255)
                                                                                     gTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcca       <  2:185633‑M1/91‑86 (MQ=255)
                                                                                     gTCGAATGAACTTCATGTTCTATGttcgaccaatccttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccat       <  1:17990‑M2/91‑68 (MQ=255)
                                                                                     GTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa       >  2:192738‑M1/1‑91 (MQ=255)
                                                                                       cGAATGATCTTCATGTTCTATGttcgaccaatccttattcctatacacaaattcctattacaacaatcacgactttgatagccccgccata     <  2:3608222‑M2/91‑70 (MQ=255)
                                                                                       cGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccata     <  1:3788723‑M2/91‑70 (MQ=255)
                                                                                        gAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaagcacgactttgatagccccgccataa    <  2:895398‑M1/91‑89 (MQ=255)
                                                                                        gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccctaa    <  2:2703893‑M2/91‑71 (MQ=255)
                                                                                        gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa    <  2:2549529‑M2/91‑71 (MQ=255)
                                                                                        gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa    <  2:2118264‑M2/91‑71 (MQ=255)
                                                                                         aacatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa   >  1:3388581‑M1/1‑2 (MQ=255)
                                                                                         aaTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa   <  2:1589143‑M2/91‑72 (MQ=255)
                                                                                          acatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa  <  2:2770446‑M1/91‑91 (MQ=255)
                                                                                          acatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa  <  1:614331‑M1/91‑91 (MQ=255)
                                                                                          aTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa  <  1:1056261‑M2/91‑73 (MQ=255)
                                                                                          |                                                                                          
AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT  >  USA300TCH1516_ALE/492633‑492813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.