| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 492723 | 99 (0.520) | 29 (0.190) | 16/128 | NT | 24.9% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 96 (0.630) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
Only 100 of 241 total aligned reads displayed.
ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAAC > USA300TCH1516_ALE/492651‑492831 | aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTAATATAAAAAAAAAAGGATTGGTCGAATGAACTTCATGTTCTATg < 2:2870629/91‑1 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt < 1:614331‑M2/91‑2 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt < 1:538426‑M2/91‑2 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt > 1:3191262‑M2/1‑90 (MQ=255) aacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt > 1:3884594‑M1/57‑91 (MQ=255) tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 1:3388581‑M2/1‑89 (MQ=255) acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 1:1291209‑M1/56‑91 (MQ=255) acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 2:2301010‑M1/56‑91 (MQ=255) acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 1:2610885‑M1/56‑91 (MQ=255) ttATGGCGGGGCTATCAGAGTCGTGATTGGTGTAATAGGAATTTTTGTATATGGAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttc < 2:895475‑M2/91‑4 (MQ=255) cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc > 2:416101‑M1/55‑91 (MQ=255) cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc > 1:1251438‑M1/55‑91 (MQ=255) cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc > 2:1170774‑M1/55‑91 (MQ=255) gtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGa > 2:1316920‑M1/53‑91 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac > 2:2311837‑M2/1‑85 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 2:185633‑M2/91‑7 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 2:670005‑M2/91‑7 (MQ=255) gCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacca > 1:214122‑M2/1‑83 (MQ=255) ctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCa > 1:430384‑M1/50‑91 (MQ=255) tagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCaa > 2:1370840‑M1/49‑91 (MQ=255) ggggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaat > 1:3576265‑M2/1‑81 (MQ=255) ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc > 2:3268036‑M2/1‑79 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 2:154915‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 1:2530551‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 2:2733844‑M2/1‑78 (MQ=255) tATCAAAATCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatccttt > 2:3438493‑M2/1‑76 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 1:2817992/1‑91 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc < 1:2825911/91‑1 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 2:1161813/1‑91 (MQ=255) aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg < 1:1736770/91‑1 (MQ=255) aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg < 2:1872297/91‑1 (MQ=255) aGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGaa < 1:2702634/91‑1 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt < 1:2390248/91‑1 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt > 1:2034180/1‑91 (MQ=255) aTTGTTGTAATAGAAATTTTTGTATATGAAAAAGGTTTGGTCGAATGAACTTCAGGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt < 2:1083309/91‑1 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt < 1:532870/91‑1 (MQ=255) tgtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg < 1:2929053/91‑1 (MQ=255) agtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg > 2:1291115‑M1/25‑91 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt > 2:3763780/1‑91 (MQ=255) tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa < 1:2654687/91‑1 (MQ=255) aGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTAc < 2:1958599/91‑1 (MQ=255) ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt < 1:3842495/91‑1 (MQ=255) gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt < 2:145731/91‑1 (MQ=255) aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaac < 2:2070350‑M2/91‑43 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtttt > 2:245188/1‑90 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 2:2922115/91‑1 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 2:1922138/91‑1 (MQ=255) tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc > 1:3635944/1‑91 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 2:690333/91‑1 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 2:547818/91‑1 (MQ=255) tttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGa > 1:2445045/1‑91 (MQ=255) ttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa < 2:2186003/91‑1 (MQ=255) gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg < 1:1431500/91‑1 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 2:3465431/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc < 1:1056691/91‑1 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 2:279918/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc < 1:45867/91‑1 (MQ=255) atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt > 1:1508589/1‑91 (MQ=255) tatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCtt > 2:3012155/1‑91 (MQ=255) atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg < 2:1476532/91‑1 (MQ=255) tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt < 2:2902006/91‑1 (MQ=255) aaaaaGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTaa > 2:631097/1‑91 (MQ=255) AGGATTGGTGGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa > 1:3718458‑M1/1‑91 (MQ=255) GGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataat < 1:2492877‑M1/91‑1 (MQ=255) GATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa > 1:1757241‑M1/1‑76 (MQ=255) GATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa < 2:1757241‑M1/76‑1 (MQ=255) ATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt > 1:2880457‑M1/1‑91 (MQ=255) ATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt < 1:1183019‑M1/91‑1 (MQ=255) TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa > 1:2770446‑M1/1‑91 (MQ=255) GGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc > 2:538426‑M1/1‑91 (MQ=255) GGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc > 2:530586‑M1/1‑91 (MQ=255) GTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa < 2:391124‑M1/91‑1 (MQ=255) GTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa < 2:1683972‑M1/91‑1 (MQ=255) TCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAc > 2:2786018‑M1/1‑91 (MQ=255) TCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAc > 2:271960‑M1/1‑91 (MQ=255) cGAATGATCTTCATGTTCTATGttcgaccaatccttattcctatacacaaattcctattacaacaatcacgactttgatagccccgccata < 2:3608222‑M2/91‑70 (MQ=255) cGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccata < 1:3788723‑M2/91‑70 (MQ=255) gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccctaa < 2:2703893‑M2/91‑71 (MQ=255) gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa < 2:2118264‑M2/91‑71 (MQ=255) aaTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa < 2:616309‑M2/91‑72 (MQ=255) aaTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa < 2:1589143‑M2/91‑72 (MQ=255) AATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGt > 1:251695‑M1/1‑91 (MQ=255) AATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGt > 1:1690434‑M1/1‑91 (MQ=255) aTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa < 1:1056261‑M2/91‑73 (MQ=255) tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt < 2:3088787/91‑1 (MQ=255) gAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaatt < 1:3171145‑M2/91‑75 (MQ=255) aaCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGt < 1:2004138/91‑1 (MQ=255) aCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtt > 1:929782/1‑91 (MQ=255) cTTGATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta < 1:3493061/91‑1 (MQ=255) ttCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttat < 2:884673/91‑1 (MQ=255) ttCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttac < 2:2287180/91‑2 (MQ=255) tCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatt > 2:3641681/1‑91 (MQ=255) tCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatt > 1:299764/1‑91 (MQ=255) cATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatta < 2:1529225/91‑1 (MQ=255) aTGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTaa > 1:3147947/1‑91 (MQ=255) gTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAg < 2:3683000/91‑1 (MQ=255) ttCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGt < 2:2101402/91‑1 (MQ=255) cTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaa > 1:2212156/1‑91 (MQ=255) tATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaac > 2:3851795/1‑91 (MQ=255) tGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaacaa > 1:1012841/1‑91 (MQ=255) | ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAAC > USA300TCH1516_ALE/492651‑492831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |