| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 511377 = | 165 (0.870) | 12 (0.070) | 10/146 | NT | 7.6% | coding (42/597 nt) | recR | Recombination protein RecR |
| ? | USA300TCH1516_ALE | 511430 = | 143 (0.820) | coding (95/597 nt) | recR | Recombination protein RecR | |||||
TGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/511473‑511377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC > USA300TCH1516_ALE/511430‑511519 TGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAAT < 1:2542495/91‑1 CTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGACTGTCTTTGGACCAATGCCTGGCAATTT < 1:2629750/91‑1 TTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCA > 2:804220/1‑91 TTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCA < 2:2894113/91‑1 TTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCA > 1:226294/1‑91 TTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCA < 1:3382902/91‑1 TGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCAT > 1:2135207/1‑91 TGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCAT < 1:3387381/91‑1 GGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATA > 2:972770/1‑91 CTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAG > 1:983054/1‑91 TAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGT > 1:760674/1‑91 TAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGT > 1:760447/1‑91 AAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTT > 2:3143364/1‑91 GGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTG > 1:3717426/1‑91 ATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCA > 1:113533/1‑91 AAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCA > 2:1127249/1‑91 AAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCA > 2:1440206/1‑91 AGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAT > 1:1884122/1‑91 GCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTA > 1:2231167/1‑91 CGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGAT > 2:2309508/1‑91 GGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAA > 1:2281238/1‑91 TTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAT > 1:2862560/1‑91 TTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATG < 2:2920253/91‑1 TCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGT < 2:1567331/91‑1 TCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGT > 2:1880152/1‑91 CATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTG > 1:3403978/1‑91 CATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTG < 1:160598/91‑1 CATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTG < 2:1433074/91‑1 CATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTG < 1:786938/91‑1 CATACCTTAGAGATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTG < 2:2341605/91‑1 ATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGG < 1:348940/91‑1 TACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGT > 2:2595007/1‑91 ACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC > 1:2804274/1‑91 ACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC > 1:2805448/1‑91 ACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC > 1:1550698/1‑91 TGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/511473‑511377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC > USA300TCH1516_ALE/511430‑511519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |