| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 511377 = | 165 (0.870) | 12 (0.070) | 10/146 | NT | 7.6% | coding (42/597 nt) | recR | Recombination protein RecR |
| ? | USA300TCH1516_ALE | 511430 = | 143 (0.820) | coding (95/597 nt) | recR | Recombination protein RecR | |||||
Only 100 of 214 total aligned reads displayed.
TTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCC > USA300TCH1516_ALE/511287‑511467 | gaccacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggt > 1:1550698‑M1/91‑91 (MQ=255)gaccacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggt > 1:2805448‑M1/91‑91 (MQ=255) ttAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTa > 2:1636466/1‑91 (MQ=255) tAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTAt < 2:1450022/91‑1 (MQ=255) tAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTAt > 1:1957664/1‑91 (MQ=255) tAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTAt > 1:3507329/1‑91 (MQ=255) cacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATg < 2:1433074‑M1/4‑1 (MQ=255) cacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATg > 1:3403978‑M1/88‑91 (MQ=255) cacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATg < 1:786938‑M1/4‑1 (MQ=255) aGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATg > 2:2492316/1‑91 (MQ=255) gTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGaa < 2:2863236/91‑1 (MQ=255) gTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGaa < 2:3748732/91‑1 (MQ=255) catacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGaa < 2:2920253‑M1/6‑1 (MQ=255) tAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGaaa < 1:2652376/91‑1 (MQ=255) aaCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAAtt > 1:249527/1‑91 (MQ=255) aaCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAAtt < 2:310007/91‑1 (MQ=255) aCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATACAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTg > 2:3413093/1‑91 (MQ=255) aTACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGcc < 2:3558219/91‑1 (MQ=255) aCTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAg < 2:2129972/91‑1 (MQ=255) cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg > 1:566810/1‑91 (MQ=255) cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg < 2:3156512/91‑1 (MQ=255) cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg > 1:66518/1‑91 (MQ=255) tCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGc > 2:217898/1‑91 (MQ=255) taGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCATATCTTAGTGATAGCTTTATGAGTTTGCCAGGCAt < 2:1754760/90‑1 (MQ=255) aaGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCAt < 2:3398530/91‑1 (MQ=255) aGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCAtt > 2:301739/1‑91 (MQ=255) ggCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTg < 1:3117769/91‑1 (MQ=255) gCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTgg > 2:2767750/1‑91 (MQ=255) gCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTgg < 1:1547696/91‑1 (MQ=255) ttAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAAtt > 2:952420/1‑77 (MQ=255) tAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTcc > 1:2766523/1‑91 (MQ=255) aaaCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCa > 1:2546885/1‑91 (MQ=255) aaCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaa > 1:2920253/1‑91 (MQ=255) aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTg > 2:1453788/1‑84 (MQ=255) aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTg < 1:1453788/84‑1 (MQ=255) aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaaa > 2:2562099/1‑91 (MQ=255) aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaaa > 1:3804048/1‑91 (MQ=255) tCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGAc > 1:2218843/1‑91 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAg > 1:3335252/1‑91 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAg < 1:3149309/91‑1 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAg > 1:235265/1‑91 (MQ=255) ttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAAA‑GCCAGGCATTGGTCCAAAGACAGcc > 1:2281238‑M1/59‑91 (MQ=255) tGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGcc > 2:3310812/1‑91 (MQ=255) gAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCa > 2:3338199/1‑91 (MQ=255) gAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCa > 1:3761241/1‑91 (MQ=255) atctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAAA‑GCCAGGCATTGGTCCAAAGACAGCCCAACg > 2:2309508‑M1/54‑91 (MQ=255) tgtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACg < 2:812037/91‑1 (MQ=255) tgtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACg < 2:1832008/91‑1 (MQ=255) gtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGt < 1:2724239/91‑1 (MQ=255) tgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTc > 2:786938/1‑91 (MQ=255) gATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCt > 2:533885/1‑91 (MQ=255) gATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCt > 1:3419979/1‑91 (MQ=255) aTCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTg > 2:348940/1‑91 (MQ=255) taatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAAA‑GCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGc > 1:2231167‑M1/48‑91 (MQ=255) cATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGc > 1:3378951/1‑91 (MQ=255) atgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCt > 1:1884122‑M1/46‑91 (MQ=255) tgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtt > 2:1127249‑M1/45‑91 (MQ=255) tAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtt > 2:1070286/1‑91 (MQ=255) aGACGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCttt < 1:3011035/91‑1 (MQ=255) gATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtttt > 1:1303340/1‑91 (MQ=255) gATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtttt < 1:2379172/91‑1 (MQ=255) tGCATTATCCAGAACCTATATCAAAACTTATTGATGGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCa < 2:1705032/91‑1 (MQ=255) tggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt > 1:113533‑M1/40‑91 (MQ=255) gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt > 1:3583892/1‑91 (MQ=255) gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt > 1:1950159/1‑91 (MQ=255) aTTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAc < 2:749399/91‑1 (MQ=255) ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc < 2:2604744/91‑1 (MQ=255) ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc < 2:1303383/91‑1 (MQ=255) tCCAGAACTTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa < 2:2590071/91‑1 (MQ=255) tCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa < 2:2431429/91‑1 (MQ=255) actgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa > 1:760674‑M1/34‑91 (MQ=255) ctgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg > 1:983054‑M1/33‑91 (MQ=255) ccAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg < 1:85284/91‑1 (MQ=255) ccAGAACCTACATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg < 2:1962960/91‑1 (MQ=255) cAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGa > 2:3733198/1‑91 (MQ=255) aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg < 2:2249754/91‑1 (MQ=255) tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa > 2:441385/1‑91 (MQ=255) tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa < 2:1277078/91‑1 (MQ=255) tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa > 1:3435905/1‑91 (MQ=255) atCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaagaa > 2:160598/1‑91 (MQ=255) cAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAagaaga < 2:2891346/91‑1 (MQ=255) aaaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGAc < 1:3464791/91‑1 (MQ=255) aaaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGAc < 2:400025/91‑1 (MQ=255) aaaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGAc < 1:465856/91‑1 (MQ=255) cTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtg > 1:1688533/1‑91 (MQ=255) cTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtg > 1:3627588/1‑91 (MQ=255) ttATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgt < 2:1389911/91‑1 (MQ=255) tATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgtt < 2:3627588/91‑1 (MQ=255) tATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgtt < 2:235265/91‑1 (MQ=255) aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg > 1:1002984/1‑91 (MQ=255) aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg > 1:132188/1‑91 (MQ=255) aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg > 1:3452857/1‑91 (MQ=255) ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGATGACGAtgttgt > 1:233073/1‑91 (MQ=255) ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt < 1:3813311/91‑1 (MQ=255) ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt < 2:1552119/91‑1 (MQ=255) tAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg < 2:2652602/91‑1 (MQ=255) aGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGt > 1:710979/1‑91 (MQ=255) gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGtt > 2:1859399/1‑91 (MQ=255) tttATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTg < 1:2129584/91‑1 (MQ=255) tttATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTg < 1:1344008/91‑1 (MQ=255) | TTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCC > USA300TCH1516_ALE/511287‑511467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |