BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	511377 =	165 (0.870)	12 (0.070)	10/146	NT	7.6%	coding (42/597 nt)	recR	Recombination protein RecR
*	?	USA300TCH1516_ALE	511430 =	143 (0.820)	12 (0.070)	10/146	NT	7.6%	coding (95/597 nt)	recR	Recombination protein RecR

Only 100 of 204 total aligned reads displayed.

ATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC  >  USA300TCH1516_ALE/511340‑511519

aTTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAc                                                                                           <  1:1329017/91‑1 (MQ=255)

aTTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAc                                                                                           <  2:749399/91‑1 (MQ=255)

 ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc                                                                                          >  2:2176973/1‑91 (MQ=255)

 ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc                                                                                          <  2:1303340/91‑1 (MQ=255)

 caaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc                                                                                          >  1:3717426‑M1/37‑91 (MQ=255)

   aactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                                                                        >  2:3143364‑M1/35‑91 (MQ=255)

    tCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa                                                                                       >  1:3099217/1‑91 (MQ=255)

    tCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa                                                                                       <  2:2431429/91‑1 (MQ=255)

    tCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa                                                                                       <  2:2589880/91‑1 (MQ=255)

    actgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa                                                                                       >  1:760447‑M1/34‑91 (MQ=255)

    actgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa                                                                                       >  1:760674‑M1/34‑91 (MQ=255)

     ctgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg                                                                                      >  1:983054‑M1/33‑91 (MQ=255)

     ccAGAACCTATATCAAAACTTATTGATAGCTTTATGAAGTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg                                                                                      <  1:1605129/91‑1 (MQ=255)

     ccAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg                                                                                      <  1:2273265/91‑1 (MQ=255)

     ccAGAACCTACATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAg                                                                                      <  2:1962960/91‑1 (MQ=255)

      cAGAACCTATATCAAAACTTATTGATAGCTTTAGAAAATTGCCAGCCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATATCTAAgg                                                                                     <  2:1732845/91‑2 (MQ=255)

       aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat                                                                                    >  1:2297511/1‑91 (MQ=255)

       aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat                                                                                    <  1:2552712/91‑1 (MQ=255)

          aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                                                                 <  2:2249754/91‑1 (MQ=255)

             tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa                                                                              <  2:1277078/91‑1 (MQ=255)

             tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa                                                                              >  1:3435905/1‑91 (MQ=255)

              atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag                                                                             <  1:2243127/91‑1 (MQ=255)

                 tCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaagaag                                                                          <  1:1833218/91‑1 (MQ=255)

                  cAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAagaaga                                                                         <  2:2890234/91‑1 (MQ=255)

                   aaaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGAc                                                                        <  1:465856/91‑1 (MQ=255)

                   aaaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGAc                                                                        <  2:400025/91‑1 (MQ=255)

                   aaaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGAc                                                                        <  1:3464338/91‑1 (MQ=255)

                    aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACg                                                                       <  1:3465721/91‑1 (MQ=255)

                       cTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtg                                                                    >  1:3627588/1‑91 (MQ=255)

                        ttATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgt                                                                   >  2:2726632/1‑91 (MQ=255)

                          aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg                                                                 >  1:1002984/1‑91 (MQ=255)

                          aTTGATAGCTTTATGAAATTGCCAGGCATTGATCCAAAGACAGCCCAACGTCTGGCTATTCATACCTTAGATATGAAAGAAGACGAtgttg                                                                 >  1:3449545/1‑91 (MQ=255)

                           ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                                                                >  1:2331859/1‑91 (MQ=255)

                           ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                                                                <  1:3813311/91‑1 (MQ=255)

                           ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                                                                <  1:491804/91‑1 (MQ=255)

                            tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt                                                               >  2:1411312/1‑91 (MQ=255)

                            tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt                                                               >  2:436530/1‑91 (MQ=255)

                               tAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg                                                            <  1:3268197/91‑1 (MQ=255)

                               tAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg                                                            <  2:2652602/91‑1 (MQ=255)

                               tAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg                                                            <  1:783227/91‑1 (MQ=255)

                                 gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGtt                                                          >  2:1859399/1‑91 (MQ=255)

                                  cTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGttt                                                         >  2:1375864/1‑91 (MQ=255)

                                   tttATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTg                                                        <  2:1537417/91‑1 (MQ=255)

                                      atgaaaagccagacgttgggctgtctttggaccaatgcctggcaatttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCa                                                     >  1:113533‑M2/53‑91 (MQ=255)

                                      ATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCa                                                     >  1:2135207‑M1/1‑91 (MQ=255)

                                       TGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCaa                                                    <  1:3382902‑M1/91‑1 (MQ=255)

                                       TGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCaa                                                    <  2:2894113‑M1/91‑1 (MQ=255)

                                         AAATTGCCAGGCATTGGTCCAAAGACAGTCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAg                                                  <  1:2629750‑M1/91‑1 (MQ=255)

                                            ttGCCAGGCATTGGTCCCAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAt                                               <  1:2766105/91‑1 (MQ=255)

                                            agccagacgttgggctgtctttggaccaatgcctggcaatttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAt                                               >  1:1884122‑M2/47‑91 (MQ=255)

                                               ccAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtag                                            <  2:851078/91‑1 (MQ=255)

                                                cAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtagt                                           >  2:596060/1‑91 (MQ=255)

                                                 aGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtagta                                          >  2:1051738/1‑91 (MQ=255)

                                                  ggCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtagtag                                         >  1:1391673/1‑91 (MQ=255)

                                                    cATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGAt                                       <  2:638815/91‑1 (MQ=255)

                                                    cATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGAt                                       >  1:1494044/1‑91 (MQ=255)

                                                       tGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACC‑TAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   <  2:3507329/91‑1 (MQ=255)

                                                        ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   >  1:620692/1‑91 (MQ=255)

                                                        ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   >  1:3721446/1‑91 (MQ=255)

                                                        ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   >  2:1828924/1‑91 (MQ=255)

                                                        ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   >  2:1646064/1‑91 (MQ=255)

                                                        ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   >  2:1243649/1‑91 (MQ=255)

                                                        ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                                   >  1:3721903/1‑91 (MQ=255)

                                                         gTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTaa                                  >  1:1676670/1‑91 (MQ=255)

                                                          tCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAag                                 <  2:1487049/91‑1 (MQ=255)

                                                            cAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag                               <  2:3728566/91‑1 (MQ=255)

                                                            cAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag                               <  1:3413093/91‑1 (MQ=255)

                                                                gACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa                           <  2:922667/91‑1 (MQ=255)

                                                                  cAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAtt                         >  2:3592882/1‑91 (MQ=255)

                                                                  cAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAtt                         >  1:700133/1‑91 (MQ=255)

                                                                  cAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAtt                         >  2:2626749/1‑91 (MQ=255)

                                                                  cAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAtt                         <  1:878670/91‑1 (MQ=255)

                                                                   aGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTa                        >  1:2463641/1‑91 (MQ=255)

                                                                    gCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTaa                       <  2:1950159/91‑1 (MQ=255)

                                                                    gCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTaa                       >  2:3238157/1‑91 (MQ=255)

                                                                     cccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAAc                      >  1:3669137/1‑91 (MQ=255)

                                                                      ccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACa                     >  2:649248/1‑91 (MQ=255)

                                                                      ccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACa                     >  2:3057660/1‑91 (MQ=255)

                                                                      ccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACa                     >  2:3130785/1‑91 (MQ=255)

                                                                       cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat                    <  2:1002984/91‑1 (MQ=255)

                                                                       cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat                    <  2:2321455/91‑1 (MQ=255)

                                                                       cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat                    >  1:281537/1‑91 (MQ=255)

                                                                         aCGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACatat                  >  2:3733764/1‑91 (MQ=255)

                                                                          cGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATAtt                 <  2:2345779/91‑1 (MQ=255)

                                                                            tCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGt               <  2:2540927/91‑1 (MQ=255)

                                                                            tCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGt               >  2:1435086/1‑91 (MQ=255)

                                                                              tGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAg             >  1:2223241/1‑91 (MQ=255)

                                                                               ggCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGc            >  1:1859520/1‑91 (MQ=255)

                                                                                gCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCg           <  1:1268216/91‑1 (MQ=255)

                                                                                gCTTTTCATACCTTAGATATGAAAGAAGACGAAGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCg           <  1:3310812/91‑1 (MQ=255)

                                                                                   tttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAt        >  1:2862560‑M2/8‑91 (MQ=255)

                                                                                     tcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAtgt      <  2:1567331‑M2/86‑1 (MQ=255)

                                                                                     tcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAtgt      >  2:1880152‑M2/6‑91 (MQ=255)

                                                                                      cataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAtgtg     >  1:3403978‑M2/5‑91 (MQ=255)

                                                                                      cataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAtgtg     <  1:786938‑M2/87‑1 (MQ=255)

                                                                                      cataCCTTAGAGATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAtgtg     <  2:2341605‑M2/87‑1 (MQ=255)

                                                                                       ataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTgg    <  1:348940‑M2/88‑1 (MQ=255)

                                                                                        taCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGt   >  2:2595007‑M2/3‑91 (MQ=255)

                                                                                         aCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTc  >  1:2804274‑M2/2‑91 (MQ=255)

                                                                                         aCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTc  >  1:1550698‑M2/2‑91 (MQ=255)

ATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTC  >  USA300TCH1516_ALE/511340‑511519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.