| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 598636 = | 202 (1.060) | 20 (0.130) | 8/132 | NT | 11.5% | intergenic (+185/+97) | tuf/yxeP_2 | Elongation factor Tu/putative hydrolase YxeP |
| ? | USA300TCH1516_ALE | = 974254 | 143 (0.910) | intergenic (+97/‑450) | mrp/oatA_1 | Iron‑sulfur cluster carrier protein/O‑acetyltransferase OatA | |||||
AAATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/598739‑598636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actttgaagggag‑cTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAA < USA300TCH1516_ALE/974254‑974165 AAATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAA < 2:3401210/91‑1 aagTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAAC < 2:3093970/88‑1 AATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAAC < 1:180850/91‑1 AATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAAC > 2:1132508/1‑91 AATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACAAAGAAAAAATGAAAAC < 2:3094057/91‑1 ATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACT > 1:1666980/1‑91 ATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACT > 2:2751263/1‑91 TTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT > 1:3227639/1‑91 TTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT > 1:3227685/1‑91 TTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT < 1:3455321/91‑1 TTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT > 1:3650687/1‑91 TTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTT < 1:3664256/91‑1 TAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTT > 2:2677624/1‑91 TAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTT > 2:1139068/1‑91 AAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTG > 2:2029015/1‑91 AAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTG < 2:508426/91‑1 AGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGA > 2:3390765/1‑91 GCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAA > 2:2390782/1‑91 GCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAA > 2:137052/1‑91 CATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAG < 2:67405/91‑1 ATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGG < 2:1335049/91‑1 ATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGG > 2:292649/1‑91 ATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGG > 2:2559134/1‑91 TTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGG < 1:3390765/91‑1 TTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGG > 1:273366/1‑91 TTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGG < 2:2826220/91‑1 TTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGG < 2:3376832/91‑1 TTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGA < 2:111977/91‑1 TTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGA > 2:2127844/1‑91 TAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAG < 1:807461/91‑1 TAAATTAACTGAAAGATATGAATCTGAGACATAAACTGATGAAATGCTCCCTGCAAAGTAGGCATTGAAAAAATGAAAACTTTGAAGGGAG < 2:3696082/91‑1 GCTCCCTTCAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGG > 1:94192/1‑91 TCCCTTCAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAGTGAATTATACTCTACAATGTTATATTGACTGCGGGC > 2:3054185/1‑91 TCCCTTCAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGC > 2:223231/1‑91 TCCCTTCAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGC > 2:223013/1‑91 CCCTTCAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCC > 2:2672505/1‑91 CAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAAC > 1:2546727/1‑91 CAAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACA > 1:1303049/1‑91 AAAGTAGACATTG‑AACAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACAC > 2:2734847/1‑91 AAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACAC > 2:567608/1‑91 AAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACAC > 1:2258184/1‑91 AAAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACAC > 1:2259189/1‑91 AAAGCAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGTGGGCCCAAACAC > 2:3222011/1‑91 AAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAGCCTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACAC < 2:2393372/91‑1 AAGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACA > 1:2330613/1‑91 AGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAG > 2:1034046/1‑91 AGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAG > 1:169652/1‑91 AGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAG > 1:2392522/1‑91 AGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAG > 2:3696306/1‑91 AGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAG > 2:345456/1‑91 AGTAGACATTG‑AAAAATGAAAATTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAG > 2:3696277/1‑91 ACTTTGAAGGGAG‑CTTATGCACTATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCT < 2:3120923/91‑1 CTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTA < 2:3878409/91‑1 CTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTA < 2:93561/91‑1 CTTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTA > 2:2613561/1‑91 TTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTAC < 1:1822238/91‑1 TTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTAC < 2:3070229/91‑1 TTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTAC < 2:3070384/91‑1 TTTGAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTAC < 2:2092165/91‑1 GAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGG < 2:637287/91‑1 GAAGGGAG‑CTTATTCACAATGAATTATACTCTACAATCTTATATTGACTGCCGGCCCAAACACAGTGAATTTCGAAAAGAAATTCCACAGG > 1:3614022/1‑91 AAGGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGC > 2:908986/1‑91 AAGGGAG‑CTTATTCACAATGAATTATACTCTACAATATTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGC < 2:3057223/91‑1 AAGGGAG‑CTTATTCACAATGAATGATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGC < 1:3823205/91‑1 GGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA < 1:1341897/91‑1 GGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA < 2:1534838/91‑1 GGGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAA < 1:3744986/91‑1 GGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAT > 2:3028554/1‑91 GGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAT > 1:1710858/1‑91 GGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAT > 1:1711924/1‑91 GGAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAT < 2:629415/91‑1 GAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 2:1574821/91‑1 GAG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATG < 1:3187784/91‑1 AG‑CTTATTCACATTGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC > 1:2978835/1‑91 AG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC < 2:1290903/91‑1 AG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC < 2:1144968/91‑1 AG‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAAAACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGC > 2:1571445/1‑91 G‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA < 1:1400657/91‑1 G‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA < 1:18867/91‑1 G‑CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA < 1:2008302/91‑1 CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTGTACAGGCAATGCAg > 1:3084150/1‑90 CTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAA < 2:3266424/91‑1 AAATTAAGCATTTAAATTAATTGAAAGATATGAATCTGAGACATAAACTAATGAAATGCTCCCTTCAAAGTAGACATTGAAAAAATGAAAACTTTGAAGGGAG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/598739‑598636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actttgaagggag‑cTTATTCACAATGAATTATACTCTACAATGTTATATTGACTGCGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAA < USA300TCH1516_ALE/974254‑974165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |