BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	598636 =	202 (1.060)	20 (0.130)	8/132	NT	11.5%	intergenic (+185/+97)	tuf/yxeP_2	Elongation factor Tu/putative hydrolase YxeP
*	?	USA300TCH1516_ALE	= 974254	143 (0.910)	20 (0.130)	8/132	NT	11.5%	intergenic (+97/‑450)	mrp/oatA_1	Iron‑sulfur cluster carrier protein/O‑acetyltransferase OatA

Only 100 of 213 total aligned reads displayed.

CTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATAT  >  USA300TCH1516_ALE/974164‑974344

 ttGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAg                                                                                           <  2:3266424‑M2/91‑2 (MQ=255)

  tGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgc                                                                                          <  1:2008302‑M2/91‑3 (MQ=255)

  tGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgc                                                                                          <  1:1400657‑M2/91‑3 (MQ=255)

   gCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTTTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgct                                                                                         >  2:1571445‑M2/1‑88 (MQ=255)

   gCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgct                                                                                         <  2:1290903‑M2/91‑4 (MQ=255)

     aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcc                                                                                       >  1:1711924‑M2/1‑86 (MQ=255)

        gCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATCATTCATTGTGAATAAgctccctt                                                                                    <  1:3823205‑M2/91‑9 (MQ=255)

         ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttc                                                                                   <  2:637287‑M2/91‑10 (MQ=255)

            gTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaa                                                                                <  2:3070229‑M2/91‑13 (MQ=255)

            gTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaa                                                                                <  2:2092165‑M2/91‑13 (MQ=255)

             tAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaag                                                                               >  2:2613561‑M2/1‑78 (MQ=255)

               gAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTa                                                                             >  1:821407/1‑91 (MQ=255)

                aaTTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAg                                                                            >  2:1503110/1‑91 (MQ=255)

                 aTTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATACTTCATTGTGAATAAGCTCCCTTCAAAGTAGa                                                                           >  2:3707346/1‑91 (MQ=255)

                  tttCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGAc                                                                          >  2:441185/1‑91 (MQ=255)

                      ttttCGATTTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTg                                                                      >  2:1081976/1‑91 (MQ=255)

                      ttttCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTg                                                                      >  1:3167082/1‑91 (MQ=255)

                       aaaagAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGa                                                                     >  2:2037714/5‑91 (MQ=255)

                         tCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGaaa                                                                   >  1:929505/1‑91 (MQ=255)

                         tCGAAATTCTCTATGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGaaa                                                                   >  1:2988816/1‑91 (MQ=255)

                         aagAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGaaa                                                                   >  2:1301505/3‑91 (MQ=255)

                          cGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGaaaa                                                                  >  2:1842818/1‑91 (MQ=255)

                           gAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGaaaaa                                                                 >  1:1674748/1‑91 (MQ=255)

                            aaaTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAAt                                                                <  2:2580396/91‑1 (MQ=255)

                             aaTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATg                                                               >  2:930113/1‑91 (MQ=255)

                             aaTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATg                                                               >  1:3700614/1‑91 (MQ=255)

                             aaTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATg                                                               <  1:1204470/91‑1 (MQ=255)

                             aaTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATg                                                               <  1:1498939/91‑1 (MQ=255)

                              aTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGa                                                              <  2:3877340/91‑1 (MQ=255)

                              aTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGa                                                              >  1:3638384/1‑91 (MQ=255)

                                tctcTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGaaa                                                            <  2:76511/91‑1 (MQ=255)

                                 ctctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGaaaa                                                           >  1:3497982/1‑91 (MQ=255)

                                   ctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaaattttcatttttcaatgtctact                                                         >  2:3696277‑M2/1‑56 (MQ=255)

                                   ctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAAtt                                                         >  1:1850092/1‑91 (MQ=255)

                                    tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTCTAATTCATTGTGAATAAGCTCCCCTCAAAGTAGACATTGAAAAATGAAAAttc                                                        >  1:3261650/1‑90 (MQ=255)

                                    tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAAttt                                                        >  1:1670891/1‑91 (MQ=255)

                                    tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAAttt                                                        >  1:2172710/1‑91 (MQ=255)

                                    tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAAttt                                                        >  1:2551687/1‑91 (MQ=255)

                                    tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAAttt                                                        >  1:3677025/1‑91 (MQ=255)

                                     gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaaattttcatttttcaatgtctacttt                                                       >  1:2259189‑M2/1‑54 (MQ=255)

                                     gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaaattttcatttttcaatgtctacttt                                                       >  2:567608‑M2/1‑54 (MQ=255)

                                     gtgtTTGGGCCCACAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaaattttcatttttcaatgtctgcttt                                                       >  2:3222011‑M2/1‑54 (MQ=255)

                                      tgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAgctcccttcaaaattttcatttttcaatgtctactttg                                                      >  1:1303049‑M2/1‑53 (MQ=255)

                                      tgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTg                                                      <  1:1882606/91‑1 (MQ=255)

                                      tgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTg                                                      <  1:2787354/91‑1 (MQ=255)

                                       gtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGa                                                     >  2:13214/1‑91 (MQ=255)

                                          tGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAgg                                                  >  2:3816828/1‑91 (MQ=255)

                                           gggCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAggg                                                 >  1:1690201/1‑91 (MQ=255)

                                            ggCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAggctcccttcaaaattttcatttttcaatgtctactttgaaggg                                                >  2:2672505‑M2/1‑47 (MQ=255)

                                            ggCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGa                                                <  1:294111/91‑1 (MQ=255)

                                             gCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAggctcccttcaaaattttcatttttcaatgtctactttgaaggga                                               >  2:223231‑M2/1‑46 (MQ=255)

                                             gCCCGCAGTCAATATAACATTGTAGAGTATAATTCACTGTGAATAAggctcccttcaaaattttcatttttcaatgtctactttgaaggga                                               >  2:3054185‑M2/1‑46 (MQ=255)

                                               ccGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGcc                                             >  2:2355249/1‑91 (MQ=255)

                                                 gCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCtt                                           <  1:1734939/91‑1 (MQ=255)

                                                  cAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCtta                                          <  1:3664419/91‑1 (MQ=255)

                                                  cAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAAATTTGAAGGGAGCCtta                                          <  1:2104603/91‑1 (MQ=255)

                                                   aGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttat                                         >  2:3436560/1‑91 (MQ=255)

                                                    gTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatt                                        >  1:134824/1‑91 (MQ=255)

                                                    gTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatt                                        <  1:1506748/91‑1 (MQ=255)

                                                    gTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatt                                        >  1:1434807/1‑91 (MQ=255)

                                                     tCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattt                                       <  1:599303/91‑1 (MQ=255)

                                                       aaTATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatttat                                     >  1:1184943/1‑91 (MQ=255)

                                                       aaTATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatttac                                     >  1:492384/1‑90 (MQ=255)

                                                        atatAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg                                    >  2:1743741/1‑91 (MQ=255)

                                                        atatAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg                                    >  1:278290/1‑91 (MQ=255)

                                                        atatAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg                                    >  1:106828/1‑91 (MQ=255)

                                                        atatAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg                                    <  1:3762846/91‑1 (MQ=255)

                                                        atatAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg                                    <  2:2286657/91‑1 (MQ=255)

                                                         tataACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAGAATGAAAATTTTGAAGGGAGCCTTATTTATGt                                   <  2:3811087/91‑1 (MQ=255)

                                                         tataACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGt                                   <  2:3027768/91‑1 (MQ=255)

                                                           taACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTc                                 <  1:2398090/91‑1 (MQ=255)

                                                            aaCATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCt                                <  2:157843/91‑1 (MQ=255)

                                                             aCATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTa                               >  1:1620296/1‑91 (MQ=255)

                                                             aCATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTa                               >  2:3530934/1‑91 (MQ=255)

                                                              cATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattta                                      >  2:602287/1‑83 (MQ=255)

                                                                ttGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGtt                            >  2:919868/1‑91 (MQ=255)

                                                                ttGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGtt                            >  2:150633/1‑91 (MQ=255)

                                                                   tAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCt                         <  2:3073521/91‑1 (MQ=255)

                                                                     gagTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGa                       >  1:981352/1‑91 (MQ=255)

                                                                      agTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGa                       <  1:3383128/90‑1 (MQ=255)

                                                                      agTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGa                       >  2:1193438/1‑90 (MQ=255)

                                                                       gTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGatt                     <  2:3481247/91‑1 (MQ=255)

                                                                         ataATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGatttt                   >  2:2411078/1‑91 (MQ=255)

                                                                         ataATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGatttt                   <  2:2224779/91‑1 (MQ=255)

                                                                         ataATCCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGatttt                   <  2:3569444/91‑1 (MQ=255)

                                                                            aTTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttatt                >  2:2708196/1‑91 (MQ=255)

                                                                             ttCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt               <  1:1318206/91‑1 (MQ=255)

                                                                             ttCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt               <  1:2600950/91‑1 (MQ=255)

                                                                             ttCATCGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt               <  2:2490123/91‑1 (MQ=255)

                                                                              tCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttatttt              <  2:2749818/91‑1 (MQ=255)

                                                                                 ttGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaa           >  1:3843560/1‑91 (MQ=255)

                                                                                  tgtgAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaa          >  1:701219/1‑91 (MQ=255)

                                                                                    tgAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTATGAAAAt        >  1:1932260/1‑91 (MQ=255)

                                                                                     gAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAAtt       >  2:900016/1‑91 (MQ=255)

                                                                                      aaTAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAAttt      <  1:2252833/91‑1 (MQ=255)

                                                                                       aTAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTta     >  1:814959/1‑91 (MQ=255)

                                                                                        tAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtat    >  1:189573/1‑91 (MQ=255)

                                                                                         aaGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtata   >  1:1030604/1‑91 (MQ=255)

                                                                                          aGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTatat  >  1:1542341/1‑91 (MQ=255)

                                                                                          aGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTatat  >  1:2366192/1‑91 (MQ=255)

CTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATAT  >  USA300TCH1516_ALE/974164‑974344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.