| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671631 = | 107 (0.560) | 19 (0.110) | 6/152 | NT | 13.4% | intergenic (+256/‑132) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 801042 | 145 (0.800) | intergenic (+176/‑175) | hisC_1/USA300HOU_RS03915 | Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase | |||||
ATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671723‑671631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAT < USA300TCH1516_ALE/801042‑800953 ATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGG < 2:929770/91‑1 TTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC < 2:2728963/91‑1 TTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC < 2:2389098/91‑1 TTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC < 1:2796453/91‑1 TTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC < 1:2796402/91‑1 TTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC < 2:2729071/91‑1 TATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA > 2:858416/1‑91 TATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA > 1:3433748/1‑91 TATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA > 2:1950915/1‑91 TATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA > 1:3792166/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC > 2:3761350/1‑81 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGC < 1:3761350/81‑1 CATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTT < 1:2216009/91‑1 AGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTC < 1:1794939/91‑1 AAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAG < 2:3745027/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 2:3269917/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:11106/91‑1 ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:1519741/91‑1 ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTC < 1:788631/91‑1 ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTC < 2:1096653/91‑1 TTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCA < 1:1857656/91‑1 TTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCA < 1:1857694/91‑1 TTGGGAATCCAATTGCTCTTTGGTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAGTGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCA < 2:3131569/91‑1 GGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAA < 2:2150416/91‑1 GGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAC < 1:856914/91‑1 GGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAC < 1:440657/91‑1 GGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAC < 1:3850250/91‑1 GAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACC < 1:2046345/91‑1 ATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTT < 1:557640/91‑1 ATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTT < 1:557641/91‑1 ATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTT < 1:3477961/91‑1 tGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTACAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAGATTG < 1:3070959/90‑1 GGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTG > 2:3109698/1‑91 GGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCCGGGCCCCAACAAAGAGAAATTG > 2:3124964/1‑91 GGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACA > 2:1499367/1‑36 GGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACA < 1:1499367/36‑1 GCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGG < 1:1870231/91‑1 GCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGG < 1:3505824/91‑1 CAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGA > 1:2244189/1‑91 CAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGA > 2:3491128/1‑91 CAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGA > 2:3548372/1‑91 AGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCATTTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAT < 2:3483765/91‑1 AGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAT < 2:3657548/91‑1 AGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTT < 1:2574945/38‑1 AGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTT > 2:2574945/1‑38 AGTAGTTGACTGAACGAAAATGCGCGTGTCACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAT < 2:3657278/91‑1 ATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671723‑671631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAT < USA300TCH1516_ALE/801042‑800953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |