| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671631 = | 107 (0.560) | 19 (0.110) | 6/152 | NT | 13.4% | intergenic (+256/‑132) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 801042 | 145 (0.800) | intergenic (+176/‑175) | hisC_1/USA300HOU_RS03915 | Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase | |||||
Only 100 of 150 total aligned reads displayed.
CAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATA > USA300TCH1516_ALE/671541‑671721 | atccaatttctctttgttggggccccgccggcaaggttgactagaattgaaaaaagcttgtgacacgcgcattttcgttcagtcaactact < 2:3657278‑M1/1‑1 (MQ=255)atccaatttctctttgttggggccccgccggcaaggttgactagaaatgaaaaaagcttgttacaagcgcattttcgttcagtcaactact < 2:3483765‑M1/1‑1 (MQ=255) tccaatttctctttgttggggccccgccggcaaggttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTg > 2:3548372‑M1/90‑91 (MQ=255) ccaatttctctttgttggggccccgccggcaaggttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGc < 1:3505824‑M1/3‑1 (MQ=255) caatttctctttgttggggccccgccggcaaggttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGcc > 2:3109698‑M1/88‑91 (MQ=255) caatctctctttgttggggccccgccggcaaggttgactagaattgtaaaaagcttgttacaagcgcattttcgttcagtcaactacTgca < 1:3070959‑M1/4‑2 (MQ=255) tCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCcggc > 1:1608404/1‑91 (MQ=31) tCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCcggc > 2:1093341/1‑91 (MQ=31) cTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCcggcg > 1:3430698/1‑91 (MQ=32) tATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCcggcgg < 1:3683060/91‑1 (MQ=33) aTGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCggg < 1:2342916/91‑1 (MQ=34) aTGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCggg < 1:2342817/91‑1 (MQ=34) tGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCgggg < 2:1318145/91‑1 (MQ=35) gCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGc < 2:1205055/91‑1 (MQ=37) ctctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcc > 2:3241303/1‑91 (MQ=38) ctctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcc > 2:3241534/1‑91 (MQ=37) ctctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcc > 1:3540571/1‑91 (MQ=38) ctctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGCGGcc < 1:3056833/91‑1 (MQ=21) tctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGccc < 2:1842804/91‑1 (MQ=38) tctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGccc > 1:1510537/1‑91 (MQ=39) tctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGccc < 2:2600717/91‑1 (MQ=39) ctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcccc > 1:1924147/1‑91 (MQ=39) ctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcccc < 1:2232770/91‑1 (MQ=37) ctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcccc < 2:2995628/91‑1 (MQ=39) cAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaac < 2:1780099/91‑1 (MQ=39) aaaGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcgaca > 1:826283/1‑91 (MQ=255) aaaGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaaca < 1:890237/91‑1 (MQ=39) aaGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaacaa < 1:944206/91‑1 (MQ=39) aaGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaacaa < 1:781309/91‑1 (MQ=37) aaGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaacaa > 2:1433329/1‑91 (MQ=39) aaGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaacaa > 2:1710276/1‑91 (MQ=39) aGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAAGTCTAGTCAACCTTGCCGGCGGGGCCCCAACaaa > 1:3439686/1‑91 (MQ=255) ttATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGACCCCAACAAaga > 2:641643/1‑91 (MQ=255) tataATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAagag < 2:2969563/91‑1 (MQ=39) ataATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAgaga > 2:816395/1‑91 (MQ=39) taATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaa > 2:2144520/1‑91 (MQ=38) taATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaa > 2:2647275/1‑91 (MQ=38) taATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaa < 2:835007/91‑1 (MQ=38) aaTGGCAGTAGTTGACTGAACGAAGATTCGCTTGTAACAAGCTTTTTTCATTTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaaa < 2:3601347/91‑1 (MQ=255) aaTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaaa > 2:1136023/1‑91 (MQ=37) aaTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaaa > 2:27897/1‑91 (MQ=37) aaTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaaa > 2:884351/1‑91 (MQ=37) aaTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaaa > 1:329534/1‑91 (MQ=37) aTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAAt < 1:635858/91‑1 (MQ=35) ggCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTg < 1:2817327/91‑1 (MQ=33) ggCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTg < 1:658959/91‑1 (MQ=34) cAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGa > 1:1809865/1‑91 (MQ=34) agtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAt < 1:1307845/91‑1 (MQ=33) agtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAt < 2:288128/91‑1 (MQ=34) agtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAt < 1:1342915/91‑1 (MQ=34) aaggttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAt < 1:557640‑M1/33‑1 (MQ=255) aaggttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAt < 1:3477961‑M1/33‑1 (MQ=255) gtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAtt > 2:60502/1‑91 (MQ=34) tagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTc < 1:2423984/91‑1 (MQ=34) tagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTc < 2:2271507/91‑1 (MQ=34) ggttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTc < 1:2046345‑M1/35‑1 (MQ=255) gttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTcc < 1:3850250‑M1/36‑1 (MQ=255) agtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTcc < 1:2496612/91‑1 (MQ=34) gttgactagaattgaaaaaagcttgttacaagcgaattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTccc < 1:440657‑M1/37‑1 (MQ=255) gtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTccc > 2:2729135/1‑91 (MQ=34) ttGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTggga < 1:2432404/86‑3 (MQ=25) ttGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTggga > 2:2432404/1‑84 (MQ=25) tgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCaa < 1:1857656‑M1/39‑1 (MQ=255) tgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCaa < 1:1857694‑M1/39‑1 (MQ=255) tgactagaattgaaaaaagcttgttacaagcgcactttcgttcagtcaacctTGCCGGCGGGGCCCCACCAAAGAGCAATTGGATTCCCaa < 2:3131569‑M1/39‑1 (MQ=255) gactagaattgaaaaaagcttgttacaagcgaattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAt < 2:1096653‑M1/40‑1 (MQ=255) gACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAt < 2:3081108/91‑1 (MQ=33) gACTGAACGAAAATTCGCTCGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAt > 2:3396332/1‑91 (MQ=21) actagaattgaaaaaagcttgttacaagcgaattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt < 1:11106‑M1/41‑1 (MQ=255) ctagaattgaaaaaagcttgttacaagcgaattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAttt < 2:3745027‑M1/42‑1 (MQ=255) cTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAttt > 1:2573826/1‑91 (MQ=34) gaattgaaaaaagcttgttacaagcgcattttcgttcagtcaactacTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCt < 1:1794939‑M1/44‑1 (MQ=255) aaCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTa > 1:816887/1‑91 (MQ=34) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAACTTGGATTCCCAATTTCTAc > 1:3752403/1‑91 (MQ=21) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc > 2:2647371/1‑91 (MQ=34) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc < 1:27897/91‑1 (MQ=34) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc > 2:27458/1‑91 (MQ=34) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc < 2:1617508/91‑1 (MQ=33) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc > 2:1884319/1‑91 (MQ=34) cGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTccc < 2:1412186/81‑1 (MQ=35) gAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAg < 1:590361/91‑1 (MQ=34) aaaaTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGa < 1:2864890/91‑1 (MQ=34) aaTTCGCTTGTAATAAGCTTTTTTCATTTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACa > 2:3543235/1‑91 (MQ=255) aaTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACa > 2:463877/1‑91 (MQ=34) aTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACaa < 1:1392934/91‑1 (MQ=33) aTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACaa < 1:2661093/91‑1 (MQ=33) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg > 1:2505759/1‑91 (MQ=31) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg > 2:1532863/1‑91 (MQ=31) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg < 1:1260502/91‑1 (MQ=31) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg < 1:1113884/91‑1 (MQ=31) aagcttgttacaagcgcattttcgttcagtcaactact < 1:2574945‑M1/1‑1 (MQ=255) aagcttgttacaagcgcattttcgttcagtcaactact > 2:2574945‑M1/38‑38 (MQ=255) aaagcttgttacaagcgaattttcgttcagtcaacctTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg < 1:2216009‑M1/54‑1 (MQ=255) tgttacaagcgcattttcgttcagtcaactacTGcc < 1:1499367‑M1/4‑1 (MQ=255) tgttacaagcgcattttcgttcagtcaactacTGcc > 2:1499367‑M1/33‑36 (MQ=255) aaCCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTa > 1:167615/1‑91 (MQ=31) cTTGCCGGCGGGGCCCCAACAAAGAGAACTTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGa > 2:2839037/1‑91 (MQ=18) TGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata > 1:3792166‑M1/1‑91 (MQ=255) TGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata > 2:1950915‑M1/1‑91 (MQ=255) TGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata > 2:858416‑M1/1‑91 (MQ=255) | CAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATA > USA300TCH1516_ALE/671541‑671721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |