| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671631 = | 107 (0.560) | 19 (0.110) | 6/152 | NT | 13.4% | intergenic (+256/‑132) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 801042 | 145 (0.800) | intergenic (+176/‑175) | hisC_1/USA300HOU_RS03915 | Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase | |||||
Only 100 of 215 total aligned reads displayed.
AATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAGTGTAAA > USA300TCH1516_ALE/800952‑801132 | aaTCCAAGGTCTCGTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGGTACAGGCGCATTCGCGTTCAGTCAactac < 2:1450102/91‑1 (MQ=11) aTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACt < 2:3657548‑M2/91‑2 (MQ=255) tCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtg > 2:3548372‑M2/1‑89 (MQ=255) tCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtg > 2:3491128‑M2/1‑89 (MQ=255) ccAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgc < 1:1870231‑M2/91‑4 (MQ=255) cAATTTCTCTTTGTTGGGGCCCGGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgcc > 2:3124964‑M2/1‑87 (MQ=255) cAATCTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGTAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgca < 1:3070959‑M2/91‑5 (MQ=255) aTTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa > 2:3756153/1‑91 (MQ=35) aTTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa < 2:1607256/91‑1 (MQ=35) aTTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa > 2:1403022/1‑91 (MQ=35) tttCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat > 1:2328506/1‑91 (MQ=37) ttCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata < 2:2266376/91‑1 (MQ=38) tctcTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat > 1:1135756/1‑91 (MQ=39) tctcTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATATTCGTTCAGTCAACTACTGCCAatat < 2:2209933/91‑1 (MQ=255) ctctTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata > 2:3279911/1‑91 (MQ=39) tctTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa > 2:2050609/1‑91 (MQ=39) ctTTGTTGGGGCCCCGCCGGCCAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc > 1:3590049/1‑91 (MQ=255) ctTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc > 1:664607/1‑91 (MQ=39) ctTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc < 1:3856831/91‑1 (MQ=38) tttGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt < 2:3328439/91‑1 (MQ=39) tttGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt > 2:1679911/1‑91 (MQ=39) ttgttgGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt > 1:1442262/1‑91 (MQ=39) ttgttgGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt < 1:1247167/91‑1 (MQ=39) ttgttgGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt > 2:2315421/1‑91 (MQ=39) tgGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTa > 2:2936529/1‑91 (MQ=38) ggggCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag < 1:3379975/91‑1 (MQ=38) ggggCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag > 2:694705/1‑91 (MQ=39) gggCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTaga > 2:8640/1‑91 (MQ=39) gggCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTaga > 2:3808621/1‑91 (MQ=38) gCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc > 1:2540460/1‑91 (MQ=39) gCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc < 1:3319704/91‑1 (MQ=39) gCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc < 2:618418/91‑1 (MQ=39) gCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc > 2:3141594/1‑91 (MQ=39) ccgccgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAtt > 2:918554/1‑91 (MQ=39) cgccgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTg < 2:359219/91‑1 (MQ=255) ccgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGaa > 2:3673917/1‑91 (MQ=255) ccgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGaa < 1:1516855/91‑1 (MQ=255) ccgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGaa > 1:1015200/1‑91 (MQ=255) ccgGCAAGGTTGACTAAAAAAGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGaa < 2:1449462/91‑1 (MQ=255) cgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAAc > 1:2684569/1‑91 (MQ=40) cgGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAAc < 2:2471085/91‑1 (MQ=40) ggCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACa > 2:1749470/1‑91 (MQ=39) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACAt > 2:3274085/1‑91 (MQ=38) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACAt > 2:2625248/1‑91 (MQ=37) cAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACAtt < 1:3667447/91‑1 (MQ=37) cAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACAtt < 1:2273921/91‑1 (MQ=37) aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgccggcggggccccaacaaagagaaattggat < 1:557640‑M2/91‑34 (MQ=255) aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgccggcggggccccaacaaagagaaattggat < 1:3477961‑M2/91‑34 (MQ=255) ggTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgccggcggggccccaacaaagagaaattggattc < 1:2046345‑M2/91‑36 (MQ=255) ggTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGAt > 1:2443429/1‑91 (MQ=33) gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGAtt < 1:3243197/91‑1 (MQ=32) gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattccc < 1:856914‑M2/91‑37 (MQ=255) gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattccc < 1:440657‑M2/91‑37 (MQ=255) ttGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCAGTCAACTACtgccggcggggccccaacaaagagaaattggattccc < 2:2150416‑M2/91‑38 (MQ=255) tGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattcccaa < 1:1857656‑M2/91‑39 (MQ=255) gACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattcccaat < 1:788631‑M2/91‑40 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgccggcggggccccaacaaagagaaattggattcccaat < 1:1519741‑M2/91‑41 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattcccaatt < 1:11106‑M2/91‑41 (MQ=255) cTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattcccaattt < 2:3745027‑M2/91‑42 (MQ=255) gAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACtgccggcggggccccaacaaagagaaattggattcccaatttct < 1:1794939‑M2/91‑45 (MQ=255) aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAAt < 1:1902081/91‑1 (MQ=32) aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAAt > 2:571316/1‑91 (MQ=32) aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAAt > 2:1821651/1‑91 (MQ=32) aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAAt > 2:1338010/1‑91 (MQ=32) aaaGCTTGTTACAAGCGAATTTTCGTTCAGTCAACCTgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatg < 1:2216009‑M2/91‑54 (MQ=255) aaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACt > 2:2574945‑M2/1‑37 (MQ=255) aaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACt < 1:2574945‑M2/38‑2 (MQ=255) aaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATCACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATg > 2:3475953/1‑91 (MQ=18) aaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATg < 2:1173299/91‑1 (MQ=33) aGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGc > 1:369469/1‑91 (MQ=34) ttGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAgt > 2:1771802/1‑91 (MQ=38) tGTTACAAGCGCATTTTCGTTCAGTCAACTACtgcc < 1:1499367‑M2/36‑5 (MQ=255) tGTTACAAGCGCATTTTCGTTCAGTCAACTACtgcc > 2:1499367‑M2/1‑32 (MQ=255) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAgtg > 2:405559/1‑91 (MQ=39) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAgtg < 2:1617395/91‑1 (MQ=39) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAgtg > 1:2902591/1‑91 (MQ=39) gTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAgtgt < 1:2625248/91‑1 (MQ=40) ttACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGtgtg < 1:1912477/91‑1 (MQ=255) ttACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGtgtg > 1:2953659/1‑91 (MQ=255) ttACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGtgtg > 1:3839933/1‑91 (MQ=255) gcgcATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAatgat > 2:1971974/1‑91 (MQ=255) gcgcATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAatgat < 1:1712750/91‑1 (MQ=255) gcgcATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCGCAAGCTCAATGTAGTGTGAatgat < 2:797792/91‑1 (MQ=255) gcATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAAtgatga < 2:1969173/91‑1 (MQ=255) tttCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTg > 2:424447/1‑91 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTga > 1:3148746/1‑91 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTga > 2:1066710/1‑91 (MQ=255) cattCAGACAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTgaga > 2:2417448/3‑91 (MQ=255) cGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTgaga < 2:2479780/91‑1 (MQ=255) gTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGagag > 1:3789082/1‑91 (MQ=255) tCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTa > 1:1020059/1‑91 (MQ=255) cAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTAt > 1:266089/1‑91 (MQ=255) cAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTAt > 1:1848669/1‑91 (MQ=255) cAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTGAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAg < 2:3187584/91‑1 (MQ=255) cAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAg > 2:3088656/1‑91 (MQ=255) aaCTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAgt < 1:401937/91‑1 (MQ=255) actactGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAgtg < 1:2736485/91‑1 (MQ=255) ctactGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAgtgt > 1:3828760/1‑91 (MQ=255) tactGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAGTGTa < 1:2106462/91‑1 (MQ=255) tactGCAAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAGTGTa < 2:2781499/91‑1 (MQ=255) | AATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAGTGTAAA > USA300TCH1516_ALE/800952‑801132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |