| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 678842 = | 147 (0.770) | 25 (0.150) | 15/136 | NT | 16.6% | intergenic (+45/+206) | pip/sarA | Proline iminopeptidase/Transcriptional regulator SarA |
| ? | USA300TCH1516_ALE | 678886 = | 127 (0.790) | intergenic (+89/+162) | pip/sarA | Proline iminopeptidase/Transcriptional regulator SarA | |||||
GCACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/678943‑678842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGTA > USA300TCH1516_ALE/678886‑678974 GCACTTAATATAAGGAAGATAGTCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTA < 1:1883781/91‑1 CACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAA < 1:2860187/91‑1 CACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAA < 2:626917/91‑1 CACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAA > 1:2128338/1‑91 CACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAA < 1:1569755/91‑1 acgTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGAAAT < 2:543610/88‑1 ACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 1:1151748/91‑1 ACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 1:2160024/91‑1 ACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 2:2635901/91‑1 ACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 2:3248455/91‑1 CTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:3494252/91‑1 CTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:3060608/91‑1 CTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:714840/91‑1 CTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC > 2:2418516/1‑91 CTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:1397604/91‑1 CTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:1219344/91‑1 TTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCA > 2:1345706/1‑91 TTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCA > 2:3864665/1‑91 AATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC > 2:1465933/1‑91 AATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC > 2:1256346/1‑91 AATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC > 1:651021/1‑91 AATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC > 1:650815/1‑91 AATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC > 1:1781707/1‑91 AATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC > 2:346011/1‑91 ATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCT > 1:1101230/1‑91 TATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTT > 2:3708522/1‑91 ATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTT > 1:671147/1‑91 ATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTT < 1:2393018/91‑1 TAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTT < 2:3035362/91‑1 TAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTT < 2:1930775/91‑1 TAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTT > 2:2940877/1‑91 AAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT > 2:449192/1‑91 AAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT < 2:1896472/91‑1 AAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT > 1:199910/1‑91 AAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT > 1:200271/1‑91 AAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT > 1:199942/1‑91 GCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAG > 2:1547309/1‑75 GCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAG < 1:1547309/75‑1 CCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTAT > 1:1899854/1‑91 GCAGTATATATCAAATACATTTCAAAAACAGCTGATTTCTATCAAATAATGACTAGTAATCAGCTTTTTTTGACATGTATTCGCTATATAC > 2:3776273/1‑91 GCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTTAAATGTATTCGCTATATAC > 2:3776291/1‑91 TACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCGTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGTGGC < 1:3367366/91‑1 TACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCGTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGC < 1:3367329/91‑1 TCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTT > 1:1161701/1‑91 CAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCATTATGCGGCTATCTTC > 2:3716060/1‑91 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATA > 2:258361/1‑91 AGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAT > 1:3672708/1‑91 AGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAT > 1:2548449/1‑91 GCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATT > 2:1696036/1‑91 GCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATT > 1:536657/1‑91 CTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTA > 2:2271992/1‑91 CTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTA > 1:2678391/1‑91 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAA > 1:954564/1‑91 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAA > 1:954563/1‑91 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAA > 1:954438/1‑91 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTACCTTATATTAA > 1:3525413/1‑91 GATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAG > 1:812039/1‑91 GATTTCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAG > 1:971982/1‑91 TCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCC > 2:1765867/1‑91 TCTATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTACTTATATTAAGTGCC > 2:1352650/1‑91 TATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCAT > 1:3806977/1‑91 ATCAAATAATGAATAGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATT > 1:1830044/1‑91 ATAATGAATGGTAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGC < 1:3716060/91‑1 TAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTA > 1:2316884/1‑91 TAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTA > 1:2316267/1‑91 AATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAA < 1:3432549/91‑1 AATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAA < 1:3432540/91‑1 AATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAA < 2:61104/91‑1 AATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAA < 1:405125/91‑1 AATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAA < 2:1117476/91‑1 AATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAA > 2:2115251/1‑91 TCAGCTTTTTTTTTTTTTTTTTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACA > 2:404676/1‑91 TCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACA > 2:404658/1‑91 CAGCTTTTTTTGAAATGTATTTGATATATACTTCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGAAAAACCTCTTAACAA < 1:3316289/91‑1 CAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAA > 2:222929/1‑91 CAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAA > 1:3418031/1‑91 CAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAA > 1:3418805/1‑91 CAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAA < 1:1612500/91‑1 CAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAA > 2:3173212/1‑91 AGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTCACAAT > 2:80049/1‑91 GCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATT < 2:738675/91‑1 TTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAG < 2:2132616/91‑1 TTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAG < 2:1207367/91‑1 TTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAG < 2:2615777/91‑1 TTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGG < 1:3059282/91‑1 TTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGG < 1:372395/91‑1 TTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGG < 1:372502/91‑1 TTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGG > 1:3849299/1‑91 TTTTTTAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGT > 2:2260307/1‑91 TTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGT < 2:1766007/91‑1 TTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGTA > 1:2650056/1‑91 GCACTTAATATAAGGAAGATAGCCGCATAACGAGCAGTATATATCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/678943‑678842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGTA > USA300TCH1516_ALE/678886‑678974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |