New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 678842 =147 (0.770)25 (0.150) 15/136 NT 16.6% intergenic (+45/+206) pip/sarA Proline iminopeptidase/Transcriptional regulator SarA
?USA300TCH1516_ALE 678886 = 127 (0.790)intergenic (+89/+162) pip/sarA Proline iminopeptidase/Transcriptional regulator SarA

Only 100 of 306 total aligned reads displayed.

AGCATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTT  >  USA300TCH1516_ALE/678752‑678932
                                                                                          |                                                                                          
 tacctaattgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaaa                                                                                           >  1:2650056‑M1/90‑91 (MQ=255)
 gCATTTATGCATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAA                                                                                           <  1:3722265‑M1/91‑1 (MQ=255)
 gCATTTATGAATTATTATTTAAAATATTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAA                                                                                           >  2:1748633‑M1/1‑91 (MQ=255)
  cATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAA                                                                                          >  2:3805948‑M1/1‑91 (MQ=255)
  acctaattgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttaaaaaa                                                                                          >  2:2260307‑M1/89‑91 (MQ=255)
   aTTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAA                                                                                         <  1:1460205‑M1/91‑1 (MQ=255)
    tttATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA                                                                                        <  2:767937‑M1/91‑1 (MQ=255)
    tttATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA                                                                                        >  1:2940877‑M1/1‑91 (MQ=255)
    ctaattgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaaaaaa                                                                                        <  2:2132616‑M1/5‑1 (MQ=255)
       aTGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAGAGCT                                                                                     <  1:3064540‑M1/91‑1 (MQ=255)
       aTGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCT                                                                                     >  2:2201406‑M1/1‑91 (MQ=255)
        ttgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTg                                                                                    <  1:1612500‑M1/9‑1 (MQ=255)
        ttgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTg                                                                                    >  2:3173212‑M1/83‑91 (MQ=255)
        ttgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTg                                                                                    >  1:3418805‑M1/83‑91 (MQ=255)
        tGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTG                                                                                    <  2:2658146‑M1/91‑1 (MQ=255)
         tgttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGa                                                                                   >  2:404658‑M1/82‑91 (MQ=255)
          aaTTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGAT                                                                                  <  1:3857242‑M1/91‑1 (MQ=255)
           attattattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATT                                                                                 >  2:391071‑M1/1‑91 (MQ=255)
            ttattattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTa                                                                                >  2:2667816/1‑91 (MQ=255)
            ttattattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTa                                                                                <  1:2670635/91‑1 (MQ=255)
            taagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTa                                                                                >  1:2316884‑M1/79‑91 (MQ=255)
             tattattTAAAATTTTTAAAAGGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtc                                                                               <  1:3732915‑M1/91‑3 (MQ=255)
             tattattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTAc                                                                               >  2:3434284/1‑91 (MQ=255)
              attattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAGCCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACt                                                                              <  2:1611847/91‑1 (MQ=255)
              attattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACt                                                                              >  1:951064/1‑91 (MQ=255)
                tattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTAt                                                                            <  2:1781416/91‑1 (MQ=255)
                 attTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTAtt                                                                           <  1:3541291/91‑1 (MQ=255)
                  tttAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTc                                                                          >  1:1056577/1‑91 (MQ=255)
                   ttAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCa                                                                         >  1:200665/1‑91 (MQ=255)
                    tAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCat                                                                        <  2:1342425/91‑1 (MQ=255)
                    tAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGAAATGTGAAAAAGCTGATTACTATTCat                                                                        <  2:2767493/91‑1 (MQ=255)
                     aaaaTTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCatt                                                                       <  2:1057653/91‑1 (MQ=255)
                      aaaTTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCatta                                                                      <  1:314803/91‑1 (MQ=255)
                       aaTTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCattat                                                                     <  2:1105171/91‑1 (MQ=255)
                          ttttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatga                                                                  <  1:1639984‑M1/91‑16 (MQ=255)
                           tttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaa                                                                 <  2:2585092‑M1/91‑17 (MQ=255)
                           tttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGa                                                                 >  1:1706594/1‑91 (MQ=255)
                            ttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGAt                                                                >  2:1475602/1‑91 (MQ=255)
                            ttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGAt                                                                <  1:1799121/91‑1 (MQ=255)
                            aatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGAt                                                                >  1:1830044‑M1/63‑91 (MQ=255)
                             tAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATa                                                               >  2:1540163/1‑91 (MQ=255)
                             tAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATa                                                               >  1:2615777/1‑91 (MQ=255)
                             tAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTCATa                                                               >  1:3006416/1‑91 (MQ=255)
                              aaaaaGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGGAATGTGAAAAAGCTGATTtctatcaaataatgaatag                                                              <  1:3281282‑M1/91‑20 (MQ=255)
                              aaaaaGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAg                                                              >  1:3815802/1‑91 (MQ=255)
                                  aGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaatagtaat                                                          <  2:483048‑M1/91‑24 (MQ=255)
                                  aGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaat                                                          >  2:661098‑M2/1‑88 (MQ=255)
                                    ttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCa                                                        >  1:954564‑M1/55‑91 (MQ=255)
                                    cGTCTCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAACCGCTGATTtctatcaaataatgaatagtaatca                                                        <  2:3085235‑M1/91‑26 (MQ=255)
                                    cGTATTATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatca                                                        <  2:2425527‑M2/91‑6 (MQ=255)
                                    cGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaatagtaatca                                                        <  1:867358‑M1/91‑26 (MQ=255)
                                    cGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatca                                                        >  2:1440428‑M2/1‑86 (MQ=255)
                                      aatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGc                                                      >  1:536657‑M1/53‑91 (MQ=255)
                                       atataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCt                                                     >  1:3672708‑M1/52‑91 (MQ=255)
                                       aTCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagct                                                     >  2:290099‑M2/1‑83 (MQ=255)
                                        tCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctt                                                    <  2:2687084‑M2/91‑10 (MQ=255)
                                        tCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctt                                                    <  2:1270205‑M2/91‑10 (MQ=255)
                                          ataataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctttt                                                  <  2:2456233‑M2/91‑12 (MQ=255)
                                          ataataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctttt                                                  <  2:71705‑M2/91‑12 (MQ=255)
                                            aataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCtttttt                                                <  1:2956219/91‑1 (MQ=255)
                                              gaagatagccgcataatgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTg                                              >  2:3716060‑M1/45‑91 (MQ=255)
                                               aagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGa                                             >  1:1161701‑M1/44‑91 (MQ=255)
                                                tgtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaa                                            >  1:2077834/1‑91 (MQ=255)
                                                tgtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaa                                            <  2:2748712/91‑1 (MQ=255)
                                                 gtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaaa                                           <  1:737909/91‑1 (MQ=255)
                                                  tgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAAt                                          >  2:425539/1‑91 (MQ=255)
                                                     tatataAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTa                                       >  1:1268812/1‑91 (MQ=255)
                                                     gccgcataacgagcagtatatatcaaatacatttcaaAAAACGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTa                                       <  1:3367329‑M1/54‑1 (MQ=255)
                                                          aaaCCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGa                                  <  1:1400129/91‑1 (MQ=255)
                                                           aaCCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGat                                 <  2:1147829/91‑1 (MQ=255)
                                                                 gggCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATAc                           >  1:2245370/1‑91 (MQ=255)
                                                                 gggCATAAAGTCCTTAGGCAATGTGAAAAAGATGATTACTATTCATTATTTGTTAGAAATCAGCTTTTTTTGAAATGTATTTGATATATAc                           >  1:1716706/1‑91 (MQ=255)
                                                                    gtatatagcgaatacatgtcaaAAAAAGCTGATTACTAGTCATTATTTGATAGAAATCAGCTGTTTTTGAAATGTATTTGATATATACTGc                        >  2:3776273‑M1/23‑91 (MQ=255)
                                                                     aTAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCt                       <  1:428814/91‑1 (MQ=255)
                                                                       aaaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCg                     >  1:983509/1‑91 (MQ=255)
                                                                       aaaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCg                     >  2:372395/1‑91 (MQ=255)
                                                                        aaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGt                    <  1:2825252/91‑1 (MQ=255)
                                                                        aaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGt                    >  1:2341971/1‑91 (MQ=255)
                                                                         aGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGtt                   >  1:1328820/1‑91 (MQ=255)
                                                                          gTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTa                  <  1:1513576/91‑1 (MQ=255)
                                                                           tCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTAt                 <  2:2837519/91‑1 (MQ=255)
                                                                            ccTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATg                >  1:2879453/1‑91 (MQ=255)
                                                                              ttAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCg              <  2:200665/91‑1 (MQ=255)
                                                                               tAGGCAATGTGAAAAAGCTGATTACTATTCATTGTTTGATAGAAATCTGCTTTTTTTGAGATGTATTTGATATATACTGCTCGTTATGCgg             <  1:3447323/91‑1 (MQ=255)
                                                                               tAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCgg             >  1:3794711/1‑91 (MQ=255)
                                                                               atacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCgg             >  1:1899854‑M1/12‑91 (MQ=255)
                                                                                aGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGc            >  2:1917602/1‑91 (MQ=255)
                                                                                aGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGc            >  1:1246722/1‑91 (MQ=255)
                                                                                 ggCAATGTGAAAGAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCt           <  2:301962/91‑1 (MQ=255)
                                                                                 ggCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCt                       >  2:3513882/1‑79 (MQ=255)
                                                                                 ggCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCt                       <  1:3513882/79‑1 (MQ=255)
                                                                                  gCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTa          >  1:2814336/1‑91 (MQ=255)
                                                                                   cAATGTGGAAAAGCTGATTACTATTCAGTATTTGGTAGAAATCAGCTTTTGTGGAAATGGTTGTGATATATACTGCTCGTTATGCGGCTAt         <  2:628357/91‑1 (MQ=25)
                                                                                   cAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTAt         >  1:749291/1‑91 (MQ=255)
                                                                                      tgtgAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCtt      >  2:3314576/1‑91 (MQ=255)
                                                                                         gAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCt   >  1:2324939/1‑91 (MQ=255)
                                                                                         gAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCt   <  2:35966/91‑1 (MQ=255)
                                                                                          AAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCtt  >  1:199910‑M1/1‑91 (MQ=255)
                                                                                          AAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCtt  >  2:449192‑M1/1‑91 (MQ=255)
                                                                                          AAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCtt  <  2:1896472‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
AGCATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTT  >  USA300TCH1516_ALE/678752‑678932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.