BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	678842 =	147 (0.770)	25 (0.150)	15/136	NT	16.6%	intergenic (+45/+206)	pip/sarA	Proline iminopeptidase/Transcriptional regulator SarA
*	?	USA300TCH1516_ALE	678886 =	127 (0.790)	25 (0.150)	15/136	NT	16.6%	intergenic (+89/+162)	pip/sarA	Proline iminopeptidase/Transcriptional regulator SarA

Only 100 of 261 total aligned reads displayed.

AATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGTA  >  USA300TCH1516_ALE/678796‑678974

aataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCtttttt                                                                                          <  1:2956219/91‑1 (MQ=255)

aataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCtttttt                                                                                          >  1:2041905/1‑91 (MQ=255)

  tatGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTg                                                                                        <  1:3635329/91‑1 (MQ=255)

    tgtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaa                                                                                      <  2:2748712/91‑1 (MQ=255)

    tgtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaa                                                                                      >  1:2077804/1‑91 (MQ=255)

     gtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaaa                                                                                     <  2:509326/91‑1 (MQ=255)

      tgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAAt                                                                                    >  2:425539/1‑91 (MQ=255)

      tgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAAt                                                                                    <  2:2667224/91‑1 (MQ=255)

        atatatAAACCTGGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGt                                                                                  <  1:1306656/91‑1 (MQ=255)

         tatataAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTa                                                                                 >  1:1268750/1‑91 (MQ=255)

         gccgcataacgagcagtatatatcaaatacatttcaaAAAACGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTa                                                                                 <  1:3367329‑M1/54‑1 (MQ=255)

            ataAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTAttt                                                                              <  2:686139/91‑1 (MQ=255)

              aaaCCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGa                                                                            <  1:1400129/91‑1 (MQ=255)

                 ccTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGatat                                                                         >  2:296528/1‑91 (MQ=255)

                    aGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGAtatata                                                                      <  1:3545360/91‑1 (MQ=255)

                     gggCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATAc                                                                     >  2:2169602/1‑91 (MQ=255)

                     gcagtatatatcaaatacatttcaaaaacagctgatttctatcaaataatgactagtaatcagctttttTTGACATGTATTCGCTATATAc                                                                     >  2:3776273‑M2/70‑91 (MQ=255)

                         aTAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCt                                                                 <  2:2857557/91‑1 (MQ=255)

                          tAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTc                                                                <  2:2082775/91‑1 (MQ=255)

                            aaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGt                                                              <  1:2825252/91‑1 (MQ=255)

                              gTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTa                                                            <  1:1170939/91‑1 (MQ=255)

                              gTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTa                                                            >  2:1105651/1‑91 (MQ=255)

                              gTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTa                                                            <  1:1513576/91‑1 (MQ=255)

                               tCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTAt                                                           <  2:2837519/91‑1 (MQ=255)

                                ccTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATg                                                          >  1:2879453/1‑91 (MQ=255)

                                  ttAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCg                                                        <  2:200665/91‑1 (MQ=255)

                                   tAGGCAATGTGAAAAAGCTGATTACTATTCATTGTTTGATAGAAATCTGCTTTTTTTGAGATGTATTTGATATATACTGCTCGTTATGCgg                                                       <  1:3447323/91‑1 (MQ=255)

                                   atacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCgg                                                       >  1:1899854‑M1/12‑91 (MQ=255)

                                    tacatttcaaaaaaagctgatttctatcaaataatgaatagtaatcagcgttttTTGAAATGTATTTGATATATACTGCTCGTTATGTGGc                                                      <  1:3367366‑M2/37‑1 (MQ=255)

                                    aGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGc                                                      >  2:1917602/1‑91 (MQ=255)

                                     ggCAATGTGAAAGAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCt                                                     <  2:301962/91‑1 (MQ=255)

                                     ggCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCt                                                                 <  1:3513882/79‑1 (MQ=255)

                                     ggCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCt                                                                 >  2:3513882/1‑79 (MQ=255)

                                      gCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTa                                                    <  2:1448420/91‑1 (MQ=255)

                                      gCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTa                                                    >  1:2814336/1‑91 (MQ=255)

                                       cAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTAt                                                   <  2:628477/91‑1 (MQ=255)

                                          tgtgAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCtt                                                >  2:3314576/1‑91 (MQ=255)

                                          tcaaaaaaagctgatttctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCtt                                                >  1:1161701‑M2/49‑91 (MQ=255)

                                           caaaaaaagctgatttctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCATTATGCGGCTATCTTc                                               >  2:3716060‑M2/48‑91 (MQ=255)

                                             gAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCt                                             >  1:2325695/1‑91 (MQ=255)

                                             gAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCt                                             <  2:35966/91‑1 (MQ=255)

                                             gAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCt                                             >  1:1389804/1‑91 (MQ=255)

                                              AAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCtt                                            >  1:199910‑M1/1‑91 (MQ=255)

                                              AAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCtt                                            >  2:449192‑M1/1‑91 (MQ=255)

                                                AAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTtat                                          <  1:2393018‑M1/91‑1 (MQ=255)

                                                 AAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTtata                                         >  2:3708522‑M1/1‑91 (MQ=255)

                                                  AGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTatat                                        >  1:1101230‑M1/1‑91 (MQ=255)

                                                   gctgatttctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAtt                                       >  1:536657‑M2/40‑91 (MQ=255)

                                                   GCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAtt                                       >  1:651021‑M1/1‑91 (MQ=255)

                                                   GCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAtt                                       >  2:346011‑M1/1‑91 (MQ=255)

                                                    ctgatttctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTa                                      >  2:2271992‑M2/39‑91 (MQ=255)

                                                     tgatttctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTaa                                     >  1:954563‑M2/38‑91 (MQ=255)

                                                     TGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTaa                                     >  2:3864665‑M1/1‑91 (MQ=255)

                                                      gatttctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg                                    >  1:971982‑M2/37‑91 (MQ=255)

                                                      GATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg                                    <  1:714840‑M1/91‑1 (MQ=255)

                                                      GATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg                                    <  1:3060608‑M1/91‑1 (MQ=255)

                                                      GATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg                                    <  1:1219344‑M1/91‑1 (MQ=255)

                                                       ATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGt                                   <  1:2160024‑M1/91‑1 (MQ=255)

                                                          tctatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTACTTATATTAAGTGcc                                >  2:1352650‑M2/33‑91 (MQ=255)

                                                          aCTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGcc                                >  2:1338780/1‑91 (MQ=255)

                                                            tatcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCAt                              >  1:3806977‑M2/31‑91 (MQ=255)

                                                            tATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAATTGCCAt                              >  1:841972/1‑91 (MQ=255)

                                                             atcaaataatgaatagtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCAtt                             >  1:1830044‑M2/30‑91 (MQ=255)

                                                             aTTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCAtt                             >  1:2861130/1‑91 (MQ=255)

                                                              ttCTTTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTa                            <  1:3056291/91‑1 (MQ=255)

                                                              ttCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTa                            <  1:2240558/91‑1 (MQ=255)

                                                                  ttattTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGc                        >  2:159713/1‑91 (MQ=255)

                                                                  ttattTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGc                        <  2:3044032/91‑1 (MQ=255)

                                                                  ttattTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGc                        <  2:2581943/91‑1 (MQ=255)

                                                                  ttattTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGc                        <  1:1013322/91‑1 (MQ=255)

                                                                  ataatgaatggtaatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGc                        <  1:3716060‑M2/67‑1 (MQ=255)

                                                                   tattTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCa                       <  1:767474/91‑1 (MQ=255)

                                                                     tttGATAGAAATCAGCTTTTTTTGAAATGTATTTGATCTATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCaaa                     >  1:3279344/1‑91 (MQ=255)

                                                                     tttGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCaaa                     >  2:1738296/1‑91 (MQ=255)

                                                                     tttGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCaaa                     <  2:1478445/91‑1 (MQ=255)

                                                                      ttGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCaaaa                    <  1:2932875/91‑1 (MQ=255)

                                                                       tGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTaa                                     <  2:2930676/73‑1 (MQ=255)

                                                                       tGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAAc                   >  2:2488363/1‑91 (MQ=255)

                                                                        gATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAAcc                  <  2:1893176/91‑1 (MQ=255)

                                                                         aTAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACct                 >  2:1692024/1‑91 (MQ=255)

                                                                          tAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACctc                <  2:37482/91‑1 (MQ=255)

                                                                          tAGAAATCAGCTTTTTTTGAAATGTATTTAATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACctc                >  2:3377204/1‑91 (MQ=255)

                                                                           aGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg                                    >  1:1744505/1‑70 (MQ=255)

                                                                            gAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCtt              <  1:3116731/91‑1 (MQ=255)

                                                                             taatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTa             >  1:2316884‑M2/14‑91 (MQ=255)

                                                                             aaaTCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTa             >  2:1127986/1‑91 (MQ=255)

                                                                             aaaTCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTa             >  1:799117/1‑91 (MQ=255)

                                                                             aaaTCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTa             <  1:2572078/91‑1 (MQ=255)

                                                                              aatcagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTaa            <  2:61104‑M2/79‑1 (MQ=255)

                                                                                tcagctttttTTTTTTTTTTTTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACa          >  2:404676‑M2/11‑91 (MQ=255)

                                                                                 cagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACaa         >  2:222929‑M2/10‑91 (MQ=255)

                                                                                 cagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACaa         <  1:1612500‑M2/82‑1 (MQ=255)

                                                                                 cagctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACaa         >  1:3418805‑M2/10‑91 (MQ=255)

                                                                                  agctttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTCACAAt        >  2:80049‑M2/9‑91 (MQ=255)

                                                                                     tttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAg     <  2:2615777‑M2/86‑1 (MQ=255)

                                                                                     tttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAg     <  2:1207367‑M2/86‑1 (MQ=255)

                                                                                      ttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAgg    <  1:372502‑M2/87‑1 (MQ=255)

                                                                                      ttttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAgg    >  1:3849299‑M2/5‑91 (MQ=255)

                                                                                       tttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGt   <  2:1766007‑M2/88‑1 (MQ=255)

                                                                                        ttTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGTa  >  1:2650056‑M2/3‑91 (MQ=255)

AATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGCCATTAGTGCAAAACCTCTTAACAATTAGGTA  >  USA300TCH1516_ALE/678796‑678974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.