| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 761262 | 168 (0.880) | 13 (0.070) | 9/148 | NT | 7.4% | coding (440/927 nt) | yciC_2 | Putative metal chaperone YciC |
| ? | USA300TCH1516_ALE | = 761280 | 168 (0.950) | coding (458/927 nt) | yciC_2 | Putative metal chaperone YciC | |||||
AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/761169‑761262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttcAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < USA300TCH1516_ALE/761280‑761191 AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT < 1:196114/91‑1AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT < 1:196934/91‑1AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT > 2:1412164/1‑91AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT > 2:1787482/1‑91AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT > 2:2127503/1‑91AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT < 1:2745850/91‑1AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACCCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT > 2:2720580/1‑91 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTT > 1:311843/1‑91 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT > 2:2705904/1‑91 TGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCA < 1:548568/91‑1 AAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAG < 2:634998/91‑1 AGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGC < 2:3884351/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 1:3750200/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 2:2185121/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 2:2223270/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 1:829828/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 2:2224369/91‑1 TTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACT < 2:3633125/91‑1 TTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACT < 1:1122062/91‑1 TATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTG < 1:3246121/91‑1 ATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTGT < 1:1189528/91‑1 TTTATGGTGTAATAGATGCGGCTCGATTTTTAGAGCGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTGTA < 2:3547417/91‑1 taggTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATCAATA < 1:3057077/87‑1 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA < 1:3441286/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 1:2441183/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 1:882342/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 2:1508432/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT > 1:2760580/1‑91 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 1:2687413/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 1:2687747/91‑1 TTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATC < 1:2374105/91‑1 TTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATC > 2:1951648/1‑91 TTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCG < 2:2360452/91‑1 TTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCG > 1:1721406/1‑91 TTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCG < 1:114738/91‑1 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG < 2:837203/91‑1 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG > 1:3744963/1‑91 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG > 1:2624984/1‑91 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG < 2:1721406/91‑1 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG > 1:736251/1‑91 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG > 1:3744631/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 2:2094923/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 1:3072700/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 1:1041928/1‑91 AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/761169‑761262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttcAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < USA300TCH1516_ALE/761280‑761191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |