BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 761262	168 (0.880)	13 (0.070)	9/148	NT	7.4%	coding (440/927 nt)	yciC_2	Putative metal chaperone YciC
*	?	USA300TCH1516_ALE	= 761280	168 (0.950)	13 (0.070)	9/148	NT	7.4%	coding (458/927 nt)	yciC_2	Putative metal chaperone YciC

Only 100 of 260 total aligned reads displayed.

CGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAA  >  USA300TCH1516_ALE/761173‑761352

cGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCg                                                                                           <  1:3197257/91‑1 (MQ=255)

cGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCg                                                                                           <  1:1124391/91‑1 (MQ=255)

cGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCg                                                                                           >  1:391908/1‑91 (MQ=255)

 gTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGc                                                                                          <  1:20275/91‑1 (MQ=255)

    aaTTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGa                                                                                       >  1:1721325/1‑91 (MQ=255)

     aTTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGAt                                                                                      <  1:1247903/91‑1 (MQ=255)

      tttCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATg                                                                                     <  2:1506838/91‑1 (MQ=255)

       ttCTTAGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGGAAATACACTTTCGCTGATgg                                                                                    >  2:1579198/1‑91 (MQ=255)

         cTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGaa                                                                                  <  2:1678068/91‑1 (MQ=255)

          tttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAg                                                                                 >  1:2835291/1‑91 (MQ=255)

          tttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAg                                                                                 <  2:1789366/91‑1 (MQ=255)

           ttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGa                                                                                <  2:2508236/91‑1 (MQ=255)

            tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttcca                                                                               <  1:548568‑M1/91‑14 (MQ=255)

            tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               >  1:3471083/1‑91 (MQ=255)

                aaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGt                                                                           >  2:2814548/1‑91 (MQ=255)

                aaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGt                                                                           <  2:2027277/91‑1 (MQ=255)

                  gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTg                                                                         >  2:2094923‑M2/1‑90 (MQ=255)

                   ccGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTga                                                                        <  2:837203‑M2/91‑3 (MQ=255)

                   ccGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTga                                                                        >  1:2624984‑M2/1‑89 (MQ=255)

                    cGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaa                                                                       >  1:1721406‑M2/1‑88 (MQ=255)

                     gATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaa                                                                      <  1:3750200‑M1/91‑23 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaac                                                                     <  2:2185121‑M1/91‑24 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaac                                                                     <  2:2223270‑M1/91‑24 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                     <  2:1508432‑M2/91‑6 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                     <  1:2687747‑M2/91‑6 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                     <  1:2687413‑M2/91‑6 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                     <  1:2441183‑M2/91‑6 (MQ=255)

                          tttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAg                                                                 <  1:924259/91‑1 (MQ=255)

                           ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                <  1:1696579/91‑1 (MQ=255)

                           ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                <  1:1695180/91‑1 (MQ=255)

                             atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                              <  2:1250567/91‑1 (MQ=255)

                               ggTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACa                                                            <  1:2962796/91‑1 (MQ=255)

                                gtgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACAt                                                           >  1:1590751/1‑91 (MQ=255)

                                 tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                          <  1:2586178/91‑1 (MQ=255)

                                      tAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattat                                                     >  2:556299/1‑91 (MQ=255)

                                       aGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattatt                                                    >  1:2402528/1‑91 (MQ=255)

                                         aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                  <  1:3047988/91‑1 (MQ=255)

                                         aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                  <  1:1079413/91‑1 (MQ=255)

                                         aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                  <  2:1017142/91‑1 (MQ=255)

                                          tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                 <  1:785919/91‑1 (MQ=255)

                                          tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                 >  1:2067968/1‑91 (MQ=255)

                                            cGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaa                                               >  1:1640962/1‑91 (MQ=255)

                                             gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                              <  2:1329442/91‑1 (MQ=255)

                                             gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                              <  1:218441/91‑1 (MQ=255)

                                              aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             >  1:1187445/1‑91 (MQ=255)

                                               cTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaataa                                            >  1:3083536/1‑91 (MQ=255)

                                                 cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                          >  1:1877449/1‑91 (MQ=255)

                                                 cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                          >  2:2574340/1‑91 (MQ=255)

                                                 cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                          >  2:313475/1‑91 (MQ=255)

                                                  gATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAt                                         <  1:723354/91‑1 (MQ=255)

                                                    tttttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTg                                       >  2:1862219/1‑91 (MQ=255)

                                                     ttttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGCTGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGa                                      <  2:3404992/91‑1 (MQ=255)

                                                        tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                   >  2:487328/1‑91 (MQ=255)

                                                         ataaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                  >  2:2261117/3‑91 (MQ=255)

                                                           aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAATTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                <  1:3267554/91‑1 (MQ=255)

                                                           aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                >  2:383666/1‑91 (MQ=255)

                                                           aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                <  1:331433/91‑1 (MQ=255)

                                                              gTCATCAATGTACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAAc                             <  1:3718488/91‑1 (MQ=255)

                                                                catcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtg                           >  1:2215270/1‑91 (MQ=255)

                                                                 atcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtga                          <  2:3083536/91‑1 (MQ=255)

                                                                 atcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtga                          <  1:1511766/91‑1 (MQ=255)

                                                                  tcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgat                         <  2:914971/91‑1 (MQ=255)

                                                                  tcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgat                         <  2:3181106/91‑1 (MQ=255)

                                                                   caATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatg                        >  2:2435814/1‑91 (MQ=255)

                                                                   caATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatg                        <  2:3033898/91‑1 (MQ=255)

                                                                    aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  2:1667630/91‑1 (MQ=255)

                                                                      tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             <  2:3546649/67‑1 (MQ=255)

                                                                      tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             >  1:3546649/1‑67 (MQ=255)

                                                                       ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                    >  1:2297312/1‑91 (MQ=255)

                                                                       ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                    >  1:3513975/1‑91 (MQ=255)

                                                                       ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                    >  1:2674941/1‑91 (MQ=255)

                                                                           cGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCtt                <  1:3827875/91‑1 (MQ=255)

                                                                            gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGACTTg               <  2:726887/91‑1 (MQ=255)

                                                                             aaaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTga              <  1:3630220/91‑1 (MQ=255)

                                                                                aTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa           <  2:3441286/91‑1 (MQ=255)

                                                                                 tACAGTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgctctaaaaatcgagccgcatctattacaccataaa          <  2:3547417‑M2/91‑65 (MQ=255)

                                                                                 tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa          <  1:651967/91‑1 (MQ=255)

                                                                                 tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa          <  2:2901860/91‑1 (MQ=255)

                                                                                 tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa          <  2:1748496/91‑1 (MQ=255)

                                                                                   cAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAAt        >  2:1435707/1‑91 (MQ=255)

                                                                                   cAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAAt        <  1:3028791/91‑1 (MQ=255)

                                                                                   cAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAAt        >  2:2631418/1‑91 (MQ=255)

                                                                                    aGTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataa       <  1:3441286‑M1/91‑86 (MQ=255)

                                                                                    aGTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataa       <  2:3633125‑M2/91‑68 (MQ=255)

                                                                                    aGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAAtt       >  1:1210411/1‑91 (MQ=255)

                                                                                     gTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      <  1:882342‑M1/91‑87 (MQ=255)

                                                                                     gTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      <  2:2224369‑M2/91‑69 (MQ=255)

                                                                                     gTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      <  1:829828‑M2/91‑69 (MQ=255)

                                                                                      tttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     >  2:1951648‑M1/1‑4 (MQ=255)

                                                                                      tttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  1:2374105‑M1/91‑88 (MQ=255)

                                                                                      tttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGa     <  2:1129173/91‑1 (MQ=255)

                                                                                      tttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGa     >  1:1989613/1‑91 (MQ=255)

                                                                                       ttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcg    <  2:2360452‑M1/91‑89 (MQ=255)

                                                                                       ttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcg    <  1:114738‑M1/91‑89 (MQ=255)

                                                                                       ttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGAt    <  2:1176963/91‑1 (MQ=255)

                                                                                        tCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcgg   >  1:3744963‑M1/1‑2 (MQ=255)

                                                                                        tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa   <  2:391908/91‑1 (MQ=255)

                                                                                        tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa   <  1:2804636/91‑1 (MQ=255)

                                                                                         caactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcggc  >  1:3072700‑M1/1‑1 (MQ=255)

                                                                                         caactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcggc  >  1:1041928‑M1/1‑1 (MQ=255)

CGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAA  >  USA300TCH1516_ALE/761173‑761352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.