| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 774511 | 156 (0.820) | 9 (0.050) | 6/144 | NT | 5.8% | coding (1761/1959 nt) | fruA | PTS system fructose‑specific EIIABC component |
| ? | USA300TCH1516_ALE | = 774540 | 152 (0.890) | coding (1790/1959 nt) | fruA | PTS system fructose‑specific EIIABC component | |||||
GTATGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/774414‑774511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgcaGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAGCT < USA300TCH1516_ALE/774540‑774451 GTATGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGG < 1:50210/91‑1 TATGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGT < 2:1158292/91‑1 TATGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGT > 2:399443/1‑91 ATGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTG < 1:399443/91‑1 TGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGG < 1:510721/91‑1 TGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGG < 2:2654728/91‑1 TGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGG < 2:480546/91‑1 GTCATTTATTACAGAAGGTGCGGTTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGC > 2:1545257/1‑91 GTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGC > 2:2532457/1‑91 TCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCG < 1:2193325/91‑1 TCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCG < 1:2193222/91‑1 TCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCG < 2:1742823/91‑1 TCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCG < 2:140571/91‑1 TCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCG < 2:1742761/91‑1 CATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGC < 2:1431331/91‑1 CATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGC < 1:1105556/91‑1 ATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCA > 1:1243848/1‑91 TTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCC < 1:336887/91‑1 TGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCA < 1:595268/91‑1 AGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATT < 1:2660831/91‑1 GCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGC < 2:1143915/91‑1 GCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGC < 2:1144051/91‑1 GCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGC < 1:680844/91‑1 CCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCC < 1:3469306/91‑1 CCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCC < 2:1486490/91‑1 CCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTA < 1:2413675/91‑1 GGCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGG > 1:2314284/1‑91 GCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGC > 2:673317/1‑91 GCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGC < 2:1500216/91‑1 GCGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGC < 2:1500523/91‑1 CGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCA > 2:1142134/1‑91 CGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCA > 2:2494214/1‑91 CGCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCA > 1:3467488/1‑91 GCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAG < 2:1838272/91‑1 GCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAG > 2:2393960/1‑91 GCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAG > 1:1543834/1‑91 GCAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCAACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAG > 1:3276364/1‑91 CAGTAATTCGTGAACCTAAGCCTAAAGCAGTTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCG > 2:3387952/1‑86 CAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAGC > 1:1093998/1‑91 CAGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCG < 1:3387952/86‑1 AGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAGCT > 2:3576548/1‑91 AGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAGCT > 1:1387471/1‑91 GTATGTCATTTATTACAGAAGGTGCGATTCCATTTGCAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/774414‑774511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgcaGTAATTCGTGAACCTAAGCCTAAAGCAATTGCGCCACCTATACCTGAACCAATCATCATTGAAGGAATAACACGTAATGGATCGGCAGCT < USA300TCH1516_ALE/774540‑774451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |