BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 774511	156 (0.820)	9 (0.050)	6/144	NT	5.8%	coding (1761/1959 nt)	fruA	PTS system fructose‑specific EIIABC component
*	?	USA300TCH1516_ALE	= 774540	152 (0.890)	9 (0.050)	6/144	NT	5.8%	coding (1790/1959 nt)	fruA	PTS system fructose‑specific EIIABC component

Only 100 of 201 total aligned reads displayed.

CAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTGGCACATTAGT  >  USA300TCH1516_ALE/774450‑774630

cAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTAc                                                                                            >  1:2909630/1‑91 (MQ=255)

 aGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACt                                                                                           >  2:3576548‑M2/1‑90 (MQ=255)

   cTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTTGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgc                                                                                         >  1:3276364‑M2/1‑88 (MQ=255)

   cTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgc                                                                                         <  2:1838272‑M2/91‑4 (MQ=255)

    tGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgcg                                                                                        >  2:1142134‑M2/1‑87 (MQ=255)

    tGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgcg                                                                                        >  1:3467488‑M2/1‑87 (MQ=255)

     gCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgcgc                                                                                       <  2:1500216‑M2/91‑6 (MQ=255)

     gCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgcgc                                                                                       >  2:673317‑M2/1‑86 (MQ=255)

         aTCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCcaca                                                                                   >  1:1674426/1‑91 (MQ=255)

         aTCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCcaca                                                                                   <  2:1513467/91‑1 (MQ=255)

          tCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAt                                                                                  >  2:1290934/1‑91 (MQ=255)

           ccATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtg                                                                                 <  1:471794/91‑1 (MQ=255)

            cATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtgg                                                                                >  2:3635045/1‑91 (MQ=255)

             aTTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggt                                                                               <  1:3030647/91‑1 (MQ=255)

             aTTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggt                                                                               <  2:479475/91‑1 (MQ=255)

             aTTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggt                                                                               >  2:2498642/1‑91 (MQ=255)

             aTTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggt                                                                               <  2:3095103/91‑1 (MQ=255)

              ttACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggtg                                                                              >  1:1701686/1‑91 (MQ=255)

              ttACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggtg                                                                              >  2:2750729/1‑91 (MQ=255)

              ttACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACAtggtg                                                                              >  1:509717/1‑91 (MQ=255)

                   tgtTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGtatt                                                                         <  1:122085/91‑1 (MQ=255)

                     ttATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGtattat                                                                       <  2:2471765/91‑1 (MQ=255)

                     ttATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGtattat                                                                       <  2:1542873/91‑1 (MQ=255)

                       aTTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTg                                                                     >  1:3815515/1‑91 (MQ=255)

                       aTTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTg                                                                     <  1:1365587/91‑1 (MQ=255)

                        ttCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGt                                                                    <  2:2700148/91‑1 (MQ=255)

                          ccTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTaa                                                                  >  1:1023759/1‑91 (MQ=255)

                          ccTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTaa                                                                  >  1:1510755/1‑91 (MQ=255)

                            ttCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTGTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAAtt                                                                <  2:70706/91‑1 (MQ=255)

                               aaTGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAAttgtt                                                             <  1:2030797/91‑1 (MQ=255)

                                atgatgATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAAttgttg                                                            >  1:715202/1‑91 (MQ=255)

                                atgatgATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAAttgttg                                                            <  1:2246441/91‑1 (MQ=255)

                                 tgatgaTTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTgg                                                           >  2:569882/1‑91 (MQ=255)

                                  gatgatTGGTTCAGGTATAGGTGGCGCAATTGCTTTCGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGt                                                          <  2:3058841/91‑1 (MQ=255)

                                  gatgatTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGt                                                          >  2:2089056/1‑91 (MQ=255)

                                   atgatTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTa                                                         >  1:1153921/1‑91 (MQ=255)

                                    tgatTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTAc                                                        >  2:2001030/1‑91 (MQ=255)

                                    tgatTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTAc                                                        <  2:2816169/91‑1 (MQ=255)

                                    tgatTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTAc                                                        <  1:2302266/91‑1 (MQ=255)

                                      atTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTg                                                      <  1:2757413/91‑1 (MQ=255)

                                       ttGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGa                                                     >  2:1694550/1‑91 (MQ=255)

                                        tGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGAt                                                    <  1:15729/91‑1 (MQ=255)

                                         ggTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATg                                                   <  2:348922/91‑1 (MQ=255)

                                         ggTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATg                                                   <  2:1539443/91‑1 (MQ=255)

                                          gTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATgg                                                  >  1:2812100/1‑91 (MQ=255)

                                           ttCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGt                                                 >  1:2481170/1‑91 (MQ=255)

                                            tctggTATGGGTGGCGCAAGTGGTTTTGGCTTAGGTTGACGAGTTACTGCGCCACATGGTGGTATTATTGTGATTGTTAGTACTGATGGTg                                                <  2:2597936/88‑1 (MQ=255)

                                             cAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGc                                               >  1:566352/1‑91 (MQ=255)

                                              aGGTAGAGCTTGCCCAATTGCTTTAGGCTGACGTTCTCGAAAGAGTCCGCCACATGGTGGTATTATTGGAATTGTTGGTACGGATGGTGca                                              <  2:3275966/91‑1 (MQ=255)

                                               ggTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGcac                                             >  1:927481/1‑91 (MQ=255)

                                               ggTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGcac                                             <  1:2277326/91‑1 (MQ=255)

                                               ggTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGcac                                             <  1:1290934/91‑1 (MQ=255)

                                                gTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGcaca                                            <  2:766403/91‑1 (MQ=255)

                                                 tataGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCacac                                           <  1:1715809/91‑1 (MQ=255)

                                                  ataGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACact                                          <  2:274280/91‑1 (MQ=255)

                                                   taGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgcgccacctatacctgaaccaatcatcattgaaggaataacacgtaatgg                                         <  1:2413675‑M2/91‑52 (MQ=255)

                                                     ggTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACacttac                                       >  1:2595780/1‑91 (MQ=255)

                                                      gTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACacttact                                      <  2:2443320/91‑1 (MQ=255)

                                                       tGGCGCAATTGTTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACacttactt                                     <  2:1307748/91‑1 (MQ=255)

                                                       tGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACacttactt                                     >  1:1391038/1‑91 (MQ=255)

                                                       tGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACacttactt                                     >  1:695847/1‑91 (MQ=255)

                                                        ggCGCAATTGCTTTAGGCTTAGGTTCACGAATTACtgcgccacctatacctgaaccaatcatcattgaaggaataacacgtaatggatcgg                                    <  2:1486490‑M2/91‑57 (MQ=255)

                                                        ggCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTc                                    <  1:3110759/91‑1 (MQ=255)

                                                         gcgcGATTGCTTTAGGCTTAGGTTCACGAATTGCTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCa                                   <  2:3270509/91‑1 (MQ=255)

                                                         gcgcAATTGCTTTAGGCTTAGGTTCACGAATTACtgcgccacctatacctgaaccaatcatcattgaaggaataacacgtaatggatcggc                                   <  2:1144051‑M2/91‑58 (MQ=255)

                                                         gcgcAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCATATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCa                                   <  2:3417330/91‑1 (MQ=255)

                                                         gcgcAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCa                                   >  2:3305569/1‑91 (MQ=255)

                                                         gcgcAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCa                                   >  2:906537/1‑91 (MQ=255)

                                                          cgcAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCaa                                  >  1:1138492/1‑91 (MQ=255)

                                                          cgcAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCaa                                  >  1:2293762/1‑91 (MQ=255)

                                                           gcAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCaaa                                 >  2:1667560/1‑91 (MQ=255)

                                                            cAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGGGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAAc                                <  2:576556/91‑1 (MQ=255)

                                                             aaTTGCTTTAGGCTTAGGTTCACGAATTACtgcgccacctatacctgaaccaatcatcattgaaggaataacacgtaatggatcggcagct                               <  1:2660831‑M2/91‑62 (MQ=255)

                                                              aTTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAActc                              <  1:3424465/91‑1 (MQ=255)

                                                               ttGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAActct                             >  2:2142798/1‑91 (MQ=255)

                                                               ttGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAActct                             >  2:2693148/1‑91 (MQ=255)

                                                                tGCTTTAGGCTTAGGTTCACGAATTACtgcgccacctatacctgaaccaatcatcattgaaggaataacacgtaatggatcggcagctgca                            <  1:595268‑M2/91‑65 (MQ=255)

                                                                 gCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTa                           <  1:1096479/91‑1 (MQ=255)

                                                                  cTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTAt                          >  2:2175609/1‑91 (MQ=255)

                                                                   tttAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTAtt                         >  1:3167189/1‑91 (MQ=255)

                                                                      aGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCa                      <  2:648642/91‑1 (MQ=255)

                                                                       ggCTTAGGTTCACGAATTACtgcgccacctatacctgaaccaatcatcattgaaggaataacacgtaatggatcggcagctgcaaatggaa                     <  1:336887‑M2/91‑72 (MQ=255)

                                                                       ggCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCAc                     <  1:640594/91‑1 (MQ=255)

                                                                        gCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACt                    <  1:1493367/91‑1 (MQ=255)

                                                                          ttAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTc                  <  1:1545257/91‑1 (MQ=255)

                                                                           tAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCt                 >  1:3865330/1‑91 (MQ=255)

                                                                           tAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCt                 <  1:362874/91‑1 (MQ=255)

                                                                           tAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCt                 >  1:453568/1‑91 (MQ=255)

                                                                            aGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTa                >  2:2381560/1‑91 (MQ=255)

                                                                            aGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTa                <  1:1497306/91‑1 (MQ=255)

                                                                            aGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTa                >  2:449144/1‑91 (MQ=255)

                                                                              gTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGt              >  1:3776052/1‑91 (MQ=255)

                                                                                tCAGGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCttgttg            <  1:3056281/91‑1 (MQ=255)

                                                                                tCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTg            >  2:3628928/1‑91 (MQ=255)

                                                                                tCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTg            <  1:2943194/91‑1 (MQ=255)

                                                                                 cACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTgg           >  2:1379024/1‑91 (MQ=255)

                                                                                    gAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTGGcac        <  1:810015/91‑1 (MQ=255)

                                                                                     aaTTACTGCGCCACATGGTGGTATTATTGTAATTGTTCGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTGGcaca       >  1:3266671/1‑91 (MQ=255)

                                                                                         aCTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTGGCACATTAg   >  1:1829084/1‑91 (MQ=255)

                                                                                         aCTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTGGCACATTAg   >  2:2715197/1‑91 (MQ=255)

CAGCTGCCGATCCATTACGTGTTATTCCTTCAATGATGATTGGTTCAGGTATAGGTGGCGCAATTGCTTTAGGCTTAGGTTCACGAATTACTGCGCCACATGGTGGTATTATTGTAATTGTTGGTACTGATGGTGCACACTTACTTCAAACTCTTATTGCACTTCTAGTTGGCACATTAGT  >  USA300TCH1516_ALE/774450‑774630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.