| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 782423 | 166 (0.870) | 11 (0.070) | 9/140 | NT | 6.5% | intergenic (‑218/+124) | USA300HOU_RS03820/USA300HOU_RS03825 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 782442 | 169 (1.020) | intergenic (‑237/+105) | USA300HOU_RS03820/USA300HOU_RS03825 | hypothetical protein/hypothetical protein | |||||
AAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/782326‑782423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgatttcACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGT < USA300TCH1516_ALE/782442‑782354 AAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTA < 2:1471758/91‑1AAACAAACCTCAAGAAATAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTA < 2:3540796/91‑1 AACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTAT < 2:1066156/91‑1 AACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTAT < 2:2852799/91‑1 AACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTAT < 1:2571751/91‑1 AACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTAT < 1:2571720/91‑1 AACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑GATATATATTGAAAAAAGGAAAGTAT > 1:3618393/1‑91 AACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGAAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTAT < 1:2726188/91‑1 ACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATG > 1:2218069/1‑91 ACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATG > 1:1584345/1‑91 CAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGA > 1:2251573/1‑91 CAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGA > 1:6944/1‑91 CAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGA > 2:319539/1‑91 CAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGA < 1:3653977/91‑1 CAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGAATTTAATAGTAG‑‑TAAAAATAATGAAAAAAGGAAAGTATGA < 2:2183897/91‑1 AACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATT < 1:3663894/91‑1 ACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTT > 1:1149927/1‑91 ACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTT < 2:3291825/91‑1 CCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTC > 2:297400/1‑91 CCTCAAGCTCTAAAAAAATTTAATTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTC > 2:3168927/1‑91 CTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATATTGAAAAAAGGAAAGTATGATTT > 1:3579961/1‑91 AAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCT < 2:2774064/91‑1 TTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTA < 1:340410/91‑1 TATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAAT < 1:2268056/91‑1 ATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATC < 1:2413762/91‑1 TCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTT < 1:1802201/91‑1 TCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTT < 2:1079981/91‑1 TCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTT < 2:1082092/91‑1 TGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTC < 2:1841782/91‑1 GCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCC < 2:3688155/91‑1 TAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACA < 1:3637054/91‑1 TATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAAT < 1:3172961/91‑1 GTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGC > 1:1398727/1‑91 ATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCAC < 2:2425462/91‑1 TGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCTATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACA > 2:793947/1‑91 TGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACA > 2:1707938/1‑91 TGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACA < 2:277013/91‑1 GATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACAT > 1:3012035/1‑91 ATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATA > 1:1094573/1‑91 ATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATA > 1:2505863/1‑91 ATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATA > 1:2505862/1‑91 ATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATA < 1:2054894/91‑1 ATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATA < 1:2054784/91‑1 TTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAG < 1:3352636/91‑1 TCATAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGT < 1:3131441/91‑1 TCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGT < 2:940316/91‑1 TCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGT < 2:940924/91‑1 AAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTG‑‑TATATATATTGAAAAAAGGAAAGTATGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/782326‑782423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgatttcACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGT < USA300TCH1516_ALE/782442‑782354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |