BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 782423	166 (0.870)	11 (0.070)	9/140	NT	6.5%	intergenic (‑218/+124)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 782442	169 (1.020)	11 (0.070)	9/140	NT	6.5%	intergenic (‑237/+105)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein

Only 100 of 228 total aligned reads displayed.

TTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTT  >  USA300TCH1516_ALE/782352‑782532

ttACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCtgt                                                                                            >  2:2566130/1‑91 (MQ=255)

ttACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCtgt                                                                                            <  1:3066402/91‑1 (MQ=255)

   cTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaa                                                                                         <  1:3352636‑M2/91‑4 (MQ=255)

     tATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaat                                                                                       >  1:1094573‑M2/1‑86 (MQ=255)

     tATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaat                                                                                       >  1:2505863‑M2/1‑86 (MQ=255)

     tATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaat                                                                                       <  1:2054894‑M2/91‑6 (MQ=255)

       tgtgCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatca                                                                                     <  2:277013‑M2/91‑8 (MQ=255)

          gCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcatac                                                                                  >  1:1398727‑M2/1‑81 (MQ=255)

           ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                 <  1:1231908/91‑1 (MQ=255)

           ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                 <  2:2602015/91‑1 (MQ=255)

            tctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGc                                                                                <  1:714723/91‑1 (MQ=255)

              tGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCtt                                                                              <  2:2887191/91‑1 (MQ=255)

               gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCttt                                                                             <  1:366222/91‑1 (MQ=255)

               gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCttt                                                                             <  2:1399120/91‑1 (MQ=255)

               gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCttt                                                                             >  2:1485700/1‑91 (MQ=255)

                 aaTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTcc                                                                           <  1:2933873/91‑1 (MQ=255)

                  aTCTTATGGGATTTCCTAGAAGCATCTATATTGAAAAAAGGAAAGTACGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCGTTccc                                                                          >  2:1321500/1‑90 (MQ=255)

                  aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                                          >  2:1642929/1‑91 (MQ=255)

                  aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                                          <  1:407183/91‑1 (MQ=255)

                    cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                        <  2:1243304/91‑1 (MQ=255)

                    cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                        >  1:1188281/1‑91 (MQ=255)

                    cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                        >  1:539782/1‑91 (MQ=255)

                    cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                        >  2:1856008/1‑91 (MQ=255)

                     ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                                       <  2:1788168/91‑1 (MQ=255)

                     ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                                       >  1:3838574/1‑91 (MQ=255)

                       aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                     <  2:2675217/91‑1 (MQ=255)

                         gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                   <  1:3119691/91‑1 (MQ=255)

                         gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                   >  2:2195190/1‑91 (MQ=255)

                           gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                                                 >  2:170675/1‑91 (MQ=255)

                           gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                                                 >  2:171035/1‑91 (MQ=255)

                           gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                                                 <  1:3167234/91‑1 (MQ=255)

                            aTTTAATAGTTGTATAAAAATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATg                                                                <  2:2871008/91‑1 (MQ=255)

                              ttAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAg                                                              <  2:2540294/91‑1 (MQ=255)

                              ttAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAg                                                              >  2:3076833/1‑91 (MQ=255)

                                 aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                   >  2:850332/1‑83 (MQ=255)

                                 aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                           <  1:1806783/91‑1 (MQ=255)

                                 aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                           >  1:1963745/1‑91 (MQ=255)

                                 aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                           <  1:3760512/91‑1 (MQ=255)

                                 aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTAAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                           >  2:3371126/1‑91 (MQ=255)

                                  tAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTa                                                          <  2:2775356/91‑1 (MQ=255)

                                   aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                         >  1:3319721/1‑91 (MQ=255)

                                   aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                         >  2:2476189/1‑91 (MQ=255)

                                   aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                         <  2:2704951/91‑1 (MQ=255)

                                      tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaacta                                                      <  1:3637054‑M2/91‑39 (MQ=255)

                                      tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                                      >  1:1429898/1‑91 (MQ=255)

                                         atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtata                                                   >  2:3880088/1‑91 (MQ=255)

                                           atatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAtt                                                 >  1:1320025/1‑91 (MQ=255)

                                               atTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaa                                             >  2:1183918/1‑91 (MQ=255)

                                                    aaaaaGCAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAtt                                        >  1:3018046/1‑91 (MQ=255)

                                                     aaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAttt                                       >  2:940067/1‑91 (MQ=255)

                                                     aaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAttt                                       <  1:297400/91‑1 (MQ=255)

                                                      aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTg                                      <  2:1387186/91‑1 (MQ=255)

                                                       aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                                     <  2:3240253/91‑1 (MQ=255)

                                                       aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                                     >  1:60212/1‑91 (MQ=255)

                                                        aGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                                    >  1:1001605/1‑91 (MQ=255)

                                                        aGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                                    >  1:3143311/1‑91 (MQ=255)

                                                         ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                   >  2:3555954/1‑91 (MQ=255)

                                                          gAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgca                                  <  2:1841782‑M2/91‑59 (MQ=255)

                                                           aaaGTATGATTTCTACAAGTTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                 <  2:1101148/91‑1 (MQ=255)

                                                           aaaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                 >  1:903589/1‑91 (MQ=255)

                                                            aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                >  2:2376974/1‑91 (MQ=255)

                                                            aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                >  2:52045/1‑91 (MQ=255)

                                                            aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                >  1:249420/1‑91 (MQ=255)

                                                             aGTATGATTTCTACAAGCTAGGGGGGATGTGAAATCATACGCTTTCCATAGAGTAATGAGTGTAATGTATATTTTAAAAATCTGTAATGta                               >  2:3696339/1‑91 (MQ=255)

                                                               tATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtata                             >  1:2092321/1‑91 (MQ=255)

                                                               tATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtata                             >  1:1071309/1‑91 (MQ=255)

                                                                 tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                           <  2:573005/91‑1 (MQ=255)

                                                                 tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                           <  2:3143311/91‑1 (MQ=255)

                                                                 tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                           <  1:3455895/91‑1 (MQ=255)

                                                                  gATTTCTACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacat                          <  1:2413762‑M2/91‑67 (MQ=255)

                                                                  gATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagta                          >  2:779266/1‑91 (MQ=255)

                                                                   aTTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                         <  2:2164488/91‑1 (MQ=255)

                                                                    tttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaat                        <  2:1081771/91‑1 (MQ=255)

                                                                     ttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata                       <  2:32752/91‑1 (MQ=255)

                                                                      tCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatag                      >  1:2725536/1‑91 (MQ=255)

                                                                        tACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                    >  2:3741409/1‑91 (MQ=255)

                                                                        tACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                    >  1:3261247/1‑91 (MQ=255)

                                                                         aCAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAt                   >  2:1751191/1‑91 (MQ=255)

                                                                         aCAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAt                   >  2:1289604/1‑91 (MQ=255)

                                                                          cAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtg                  >  1:2167023/1‑91 (MQ=255)

                                                                          cAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtg                  >  2:3686450/1‑91 (MQ=255)

                                                                           aaGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgt                 >  2:1445244/1‑91 (MQ=255)

                                                                           aaGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgt                 >  1:466920/1‑91 (MQ=255)

                                                                             gCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgttg               >  2:1525997/1‑91 (MQ=255)

                                                                             gCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgttg               <  1:3418893/91‑1 (MQ=255)

                                                                              cTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgttgt              <  2:3067176/91‑1 (MQ=255)

                                                                              cTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgttgt              >  2:3408329/1‑91 (MQ=255)

                                                                              cTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgttgt              <  1:634713/91‑1 (MQ=255)

                                                                                 ggggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa           >  2:427048/1‑91 (MQ=255)

                                                                                 ggggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa           >  1:1597857/1‑91 (MQ=255)

                                                                                 ggggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa           <  1:1289958/91‑1 (MQ=255)

                                                                                  gggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaat          >  1:1657351/1‑91 (MQ=255)

                                                                                   ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata         >  1:2571440/1‑91 (MQ=255)

                                                                                   ggggCTATGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata         >  1:2297895/1‑91 (MQ=255)

                                                                                    gggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaataa        >  1:838257/1‑91 (MQ=255)

                                                                                    gggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaataa        >  1:1029952/1‑91 (MQ=255)

                                                                                     ggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaataaa       <  1:2581109/91‑1 (MQ=255)

                                                                                         gtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGtt   <  2:3003438/91‑1 (MQ=255)

                                                                                         gtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGtt   >  1:1762839/1‑91 (MQ=255)

                                                                                          tgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGttt  >  1:2922119/1‑91 (MQ=255)

TTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTT  >  USA300TCH1516_ALE/782352‑782532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.