BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 782423	166 (0.870)	11 (0.070)	9/140	NT	6.5%	intergenic (‑218/+124)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 782442	169 (1.020)	11 (0.070)	9/140	NT	6.5%	intergenic (‑237/+105)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein

Only 100 of 251 total aligned reads displayed.

CCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGT  >  USA300TCH1516_ALE/782333‑782513

ccTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTC                                                                                            >  2:297400‑M1/1‑91 (MQ=255)

ccTCAAGCTCTAAAAAAATTTAATTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTC                                                                                            >  2:3168927‑M1/1‑91 (MQ=255)

 cTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCt                                                                                           >  1:3579093/1‑91 (MQ=255)

  tCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTa                                                                                          >  1:3463518/1‑91 (MQ=255)

  tCAAACTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTa                                                                                          >  1:3067176/1‑91 (MQ=255)

   cAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTAc                                                                                         >  2:3510571/1‑91 (MQ=255)

   cAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTAc                                                                                         >  1:226786/1‑91 (MQ=255)

    aaGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACa                                                                                        >  2:1289935/1‑91 (MQ=255)

     aGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACaa                                                                                       <  2:2446712/91‑1 (MQ=255)

     aGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACaa                                                                                       <  1:2199462/91‑1 (MQ=255)

       ctctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGc                                                                                     <  2:432098/91‑1 (MQ=255)

        tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCt                                                                                    <  2:263862/91‑1 (MQ=255)

        tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCt                                                                                    <  2:3262249/91‑1 (MQ=255)

        tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCt                                                                                    <  2:815977/91‑1 (MQ=255)

         ctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTa                                                                                   >  1:1835141/1‑91 (MQ=255)

           aaaaaaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgg                                                                                 <  2:3066034/91‑1 (MQ=255)

             aaaaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgggg                                                                               <  1:611617/91‑1 (MQ=255)

               aaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgggggg                                                                             >  2:1947862/1‑91 (MQ=255)

               aaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgggggg                                                                             >  1:1707938/1‑91 (MQ=255)

               aaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgggggg                                                                             <  2:1511579/91‑1 (MQ=255)

                aaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGc                                                                            >  1:327666/1‑91 (MQ=255)

                 aTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTAAATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCt                                                                           <  2:1895255/91‑1 (MQ=255)

                   ttACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCtgt                                                                         >  2:2566130/1‑91 (MQ=255)

                     aCTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTga                                                                       <  2:940316‑M2/91‑3 (MQ=255)

                        tATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaat                                                                    <  1:2054784‑M2/91‑6 (MQ=255)

                        tATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaat                                                                    <  1:2054894‑M2/91‑6 (MQ=255)

                         aTGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCacagcccccctagcttgtagaaatc                                                                   <  1:2413762‑M1/91‑26 (MQ=255)

                         aTGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatc                                                                   >  1:3012035‑M2/1‑85 (MQ=255)

                          tgtgCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatca                                                                  <  2:277013‑M2/91‑8 (MQ=255)

                              ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                              <  1:1231908/91‑1 (MQ=255)

                              ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                              <  1:2566130/91‑1 (MQ=255)

                              ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                              <  1:3386494/91‑1 (MQ=255)

                               tctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCacagcccccctagcttgtagaaatcatactt                                                             <  1:1802201‑M1/91‑32 (MQ=255)

                               tctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGc                                                             <  1:714723/91‑1 (MQ=255)

                                  gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGGTAGGGGGGCTGTGAAATCATACGCttt                                                          >  2:176519/1‑91 (MQ=255)

                                  gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCttt                                                          >  2:1485700/1‑91 (MQ=255)

                                    aaTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTcc                                                        <  1:2933873/91‑1 (MQ=255)

                                     aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                       <  2:2595779/91‑1 (MQ=255)

                                     aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                       >  2:1610426/1‑91 (MQ=255)

                                     aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                       <  1:407183/91‑1 (MQ=255)

                                       cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                     >  1:1188281/1‑91 (MQ=255)

                                       cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                     <  2:1243304/91‑1 (MQ=255)

                                       cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                     >  1:539782/1‑91 (MQ=255)

                                        ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                    >  1:2760093/1‑91 (MQ=255)

                                         tATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                   <  1:3203303/91‑1 (MQ=255)

                                         tATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                   <  1:1341658/91‑1 (MQ=255)

                                          aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                  <  2:2675217/91‑1 (MQ=255)

                                            gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                <  1:3119691/91‑1 (MQ=255)

                                            gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                >  2:2195190/1‑91 (MQ=255)

                                              gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                              >  1:3825954/1‑91 (MQ=255)

                                              gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                              <  1:3167234/91‑1 (MQ=255)

                                              gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                              >  2:170675/1‑91 (MQ=255)

                                              gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                              >  2:171035/1‑91 (MQ=255)

                                               aTTTAATAGTTGTATAAAAATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATg                                             <  2:2871008/91‑1 (MQ=255)

                                                 ttAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAg                                           >  2:3076833/1‑91 (MQ=255)

                                                   aaTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtg                                         <  2:1392405/91‑1 (MQ=255)

                                                   aaTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtg                                         >  2:2530411/1‑91 (MQ=255)

                                                    aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                <  1:850332/83‑1 (MQ=255)

                                                    aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                        >  1:1963745/1‑91 (MQ=255)

                                                     tAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTa                                       <  2:2775356/91‑1 (MQ=255)

                                                      aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                      <  2:2704951/91‑1 (MQ=255)

                                                      aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                      >  2:2476189/1‑91 (MQ=255)

                                                         tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                   >  1:1429898/1‑91 (MQ=255)

                                                            atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtata                                >  2:3880088/1‑91 (MQ=255)

                                                             tatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTatat                               >  2:1796652/1‑91 (MQ=255)

                                                             tatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTatat                               >  2:3628273/1‑91 (MQ=255)

                                                             tatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTatat                               >  2:3764429/1‑91 (MQ=255)

                                                                  atTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaa                          >  2:1183918/1‑91 (MQ=255)

                                                                  atTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaa                          <  1:971569/91‑1 (MQ=255)

                                                                   ttGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaaa                         >  1:2662845/1‑91 (MQ=255)

                                                                     gAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaaaaa                       >  1:3041580/1‑91 (MQ=255)

                                                                      aaaaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                             >  2:750020/1‑84 (MQ=255)

                                                                      aaaaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAt                      <  2:3642969/91‑1 (MQ=255)

                                                                         aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTCAAAATTTg                   >  2:3375455/1‑91 (MQ=255)

                                                                          aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                  >  1:3746957/1‑91 (MQ=255)

                                                                          aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                  <  2:3240253/91‑1 (MQ=255)

                                                                           aGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                 >  1:1001605/1‑91 (MQ=255)

                                                                           aGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                 >  1:3143311/1‑91 (MQ=255)

                                                                            ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                >  1:3661154/1‑91 (MQ=255)

                                                                             gAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgca               <  2:1841782‑M2/91‑59 (MQ=255)

                                                                               aaGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcaga             <  2:1082092‑M2/91‑61 (MQ=255)

                                                                               aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt             >  2:2376974/1‑91 (MQ=255)

                                                                               aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt             >  2:52045/1‑91 (MQ=255)

                                                                                aGTATGATTTCTACAAGCTAGGGGGGATGTGAAATCATACGCTTTCCATAGAGTAATGAGTGTAATGTATATTTTAAAAATCTGTAATGta            >  2:3696339/1‑91 (MQ=255)

                                                                                 gTATGATTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagc           >  1:1398727‑M1/1‑10 (MQ=255)

                                                                                    tGATTTCacagcccccctagcttgtagaaatcatactttccttttttctatatatatacaactattaaatcccataagattgcagagcaca        >  2:793947‑M1/1‑7 (MQ=255)

                                                                                    tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt        <  2:3143311/91‑1 (MQ=255)

                                                                                    tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt        <  2:573005/91‑1 (MQ=255)

                                                                                    tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt        <  2:887774/91‑1 (MQ=255)

                                                                                      aTTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacata      >  1:2505862‑M1/1‑5 (MQ=255)

                                                                                      aTTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacata      >  1:2505863‑M1/1‑5 (MQ=255)

                                                                                      aTTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacata      >  1:1094573‑M1/1‑5 (MQ=255)

                                                                                       tttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaat     <  2:1081771/91‑1 (MQ=255)

                                                                                        ttCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataag    <  1:3352636‑M1/91‑89 (MQ=255)

                                                                                        ttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata    <  2:32752/91‑1 (MQ=255)

                                                                                        ttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata    <  2:2906801/91‑1 (MQ=255)

                                                                                        ttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata    <  2:1335847/91‑1 (MQ=255)

                                                                                          cTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagt  >  1:445265/1‑91 (MQ=255)

                                                                                          cTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagt  <  1:1617751/91‑1 (MQ=255)

                                                                                          cTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagt  >  1:2342799/1‑91 (MQ=255)

CCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGT  >  USA300TCH1516_ALE/782333‑782513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.