| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 801949 = | 216 (1.130) | 14 (0.080) | 7/156 | NT | 6.5% | intergenic (+190/+434) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | = 848322 | 190 (1.020) | intergenic (+327/‑553) | trxB/USA300HOU_RS04145 | Thioredoxin reductase/Nucleotide‑binding protein | |||||
TAGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/802040‑801949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTACA < USA300TCH1516_ALE/848322‑848233 TAGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTT < 1:2090071/91‑1TAGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTT < 1:2250170/91‑1TAGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTT < 2:3646085/91‑1TAGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTT < 1:3072122/91‑1 AGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTA > 1:59033/1‑91 AGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTA > 1:3837842/1‑91 AGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTACTAAAGAAAAAGTATTTCTTTA > 2:3121207/1‑91 AAAATAGTAATATATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATGCAT < 2:541634/91‑1 AGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAATAC > 1:436476/1‑91 AGAAATACTAATTTCTAAAGAAAAAGTATTCCTTTAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAATAC > 1:437540/1‑91 GAAATACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACA > 1:100333/1‑91 AAATACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACAC > 1:3392287/1‑91 AAATACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACAC > 1:2700192/1‑91 ACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTA > 1:675678/1‑91 ACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTA > 1:676106/1‑91 ACTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATACATGACTTTTACTCATGTATTCCTATTCTTAAGTGCACATTg > 2:3838388/1‑90 ACTAATTTCTAAAGAAAAAGTAATTCTTTAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTA > 1:1717506/1‑91 CTAATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAG > 1:1847619/1‑91 ATTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTG > 1:2395553/1‑91 TTTCTAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTCTTAAGTGCACATTAGCagc > 2:2060730/1‑88 TAAAGAAAAAGTATTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGttt > 2:1798149/1‑88 TAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTAC < 1:950172/91‑1 TAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTAC < 1:2044123/91‑1 TAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTAC > 2:768577/1‑91 AGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTACA > 2:12038/1‑91 AGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTACA < 1:3374180/91‑1 TAGTCACAGCTAATGTGTACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/802040‑801949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTTTAAGAACCACTACA < USA300TCH1516_ALE/848322‑848233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |