BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	801949 =	216 (1.130)	14 (0.080)	7/156	NT	6.5%	intergenic (+190/+434)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase
*	?	USA300TCH1516_ALE	= 848322	190 (1.020)	14 (0.080)	7/156	NT	6.5%	intergenic (+327/‑553)	trxB/USA300HOU_RS04145	Thioredoxin reductase/Nucleotide‑binding protein

Only 100 of 231 total aligned reads displayed.

ATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCG  >  USA300TCH1516_ALE/848232‑848412

    aGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCtata                                                                                        >  1:2683980/1‑91 (MQ=34)

     gTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAg                                                                                       >  1:106645/1‑91 (MQ=34)

      tGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGa                                                                                      >  1:462139/1‑91 (MQ=34)

      tGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGa                                                                                      <  1:3103246/91‑1 (MQ=34)

       ggTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaa                                                                                     <  2:2389658/91‑1 (MQ=34)

         ttCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaaaa                                                                                   >  2:2860574/1‑91 (MQ=34)

          tCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaaaaa                                                                                  >  2:1449420/1‑91 (MQ=33)

          tCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaaaaa                                                                                  >  1:1234264/1‑91 (MQ=34)

           cTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAg                                                                                 >  2:3507986/1‑91 (MQ=34)

             tAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTa                                                                               >  1:2857852/1‑91 (MQ=33)

             tAAACAGTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTa                                                                               <  2:568926/91‑1 (MQ=18)

               aaCATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAtt                                                                             <  1:1062952/91‑1 (MQ=31)

               aaCATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAtt                                                                             <  2:1378967/91‑1 (MQ=31)

               aaCATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAtt                                                                             <  2:2025374/91‑1 (MQ=31)

               aaCATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAtt                                                                             >  1:3730693/1‑91 (MQ=31)

               aaCATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAtt                                                                             <  1:2483206/91‑1 (MQ=31)

                 cATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTAc                                                                           <  1:3776520/91‑1 (MQ=32)

                  aTTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACt                                                                          <  1:536642/91‑1 (MQ=33)

                   ttAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACtt                                                                         <  1:383001/91‑1 (MQ=34)

                   ttAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACtt                                                                         <  1:2782633/91‑1 (MQ=33)

                     aaacacagctAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCtaaagaaatactttttcttta                                                                       >  2:1798149‑M2/4‑70 (MQ=255)

                     aGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTa                                                                       >  1:2583912/1‑91 (MQ=34)

                      gCCACAGCCAATGTGTACTTAAAAATAGGAATACGTGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTAt                                                                      <  2:3765583/91‑1 (MQ=255)

                       ccACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATc                                                                     >  1:2225925/1‑91 (MQ=34)

                       ccACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATc                                                                     >  1:715079/1‑91 (MQ=34)

                       ccACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATc                                                                     >  1:3570784/1‑91 (MQ=34)

                        tgtggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCg                                                                    >  2:1552995/5‑91 (MQ=18)

                        tgtggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCg                                                                    >  2:657268/5‑91 (MQ=18)

                         gtggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGt                                                                   >  1:3027877/4‑91 (MQ=21)

                         acaGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGt                                                                   <  1:954869/91‑1 (MQ=34)

                          tggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGtt                                                                  >  1:3742212/3‑91 (MQ=25)

                            gCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGt                                                                <  1:993434/91‑1 (MQ=38)

                            gCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGt                                                                >  1:2121321/1‑91 (MQ=38)

                             cTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCtaaagaaatactttttctttagaaattag                                                               >  1:1847619‑M2/1‑62 (MQ=255)

                              tAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCtaaagaaatactttttctttagaaattagt                                                              >  1:675678‑M2/1‑61 (MQ=255)

                                aTGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCa                                                            >  1:2282864/1‑91 (MQ=39)

                                 tgtgTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCAc                                                           <  2:3843789/91‑1 (MQ=39)

                                  gtgtACTTAAAAATATGAATGCATGAGTTACACTCATGCATAAGAAATACTAATTTCtaaagaaatactttttctttagaaattagtattt                                                          >  1:3392287‑M2/1‑57 (MQ=255)

                                  gtgtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCAcc                                                          >  1:1689711/1‑91 (MQ=38)

                                  gtgtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCAcc                                                          >  2:2914179/1‑91 (MQ=39)

                                  gtgtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCAcc                                                          >  1:2935920/1‑91 (MQ=39)

                                   tgtATTTAAAAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCtaaagaaatactttttctttagaaattagtatttc                                                         >  1:100333‑M2/1‑56 (MQ=255)

                                   tgtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCAccc                                                         <  1:3196442/91‑1 (MQ=39)

                                   tgtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCAccc                                                         <  2:3249366/91‑1 (MQ=39)

                                    gtATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCtaaagaaatactttttctttagaaattagtatttct                                                        >  1:436476‑M2/1‑55 (MQ=255)

                                      aCTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCGCCCCaa                                                      <  1:1449420/91‑1 (MQ=255)

                                      aCTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCaa                                                      <  1:3310517/91‑1 (MQ=39)

                                      aCTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCaa                                                      <  1:2339169/91‑1 (MQ=39)

                                      aCTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCaa                                                      >  1:3469044/1‑91 (MQ=38)

                                       cgtAAAAGTAGGAATACATGAATAAAACTCATGCATAAGAAATACTAAAAAAAAAAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAAc                                                     <  2:2570473/89‑1 (MQ=14)

                                        ttAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACt                                                    <  1:1096453/91‑1 (MQ=39)

                                        ttAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACt                                                    <  2:478824/91‑1 (MQ=39)

                                           aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGc                                                 <  2:1371325/91‑1 (MQ=255)

                                           aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGc                                                 <  2:1371753/91‑1 (MQ=40)

                                            aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGca                                                >  2:90074/1‑91 (MQ=255)

                                             aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGcac                                               <  2:2229848/91‑1 (MQ=255)

                                             aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGcac                                               >  1:1159782/1‑91 (MQ=255)

                                              aTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGcaca                                              >  2:2313281/1‑91 (MQ=255)

                                                 ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAATAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACatta                                           >  2:3406184/1‑91 (MQ=255)

                                                 ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACatta                                           >  1:720697/1‑91 (MQ=255)

                                                  gAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACattat                                          <  1:930474/91‑1 (MQ=255)

                                                     tACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGt                                       <  2:3179113/91‑1 (MQ=255)

                                                     tACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGt                                       <  2:950172/91‑1 (MQ=255)

                                                        aTGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAg                                    <  2:388195/91‑1 (MQ=255)

                                                          gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCt                                  >  2:11679/1‑91 (MQ=255)

                                                           aGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTg                                 <  2:1139879/91‑1 (MQ=255)

                                                            gTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGa                                <  1:1587390/91‑1 (MQ=255)

                                                            gTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGa                                >  2:1633739/1‑91 (MQ=255)

                                                              tttaCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACt                              >  2:850130/4‑91 (MQ=255)

                                                              aaaaCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACt                              <  2:1407496/91‑1 (MQ=255)

                                                               aaaCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACtt                             >  2:2427273/1‑91 (MQ=255)

                                                                 aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTc                           >  2:3698958/1‑91 (MQ=255)

                                                                 aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTc                           <  2:1892036/91‑1 (MQ=255)

                                                                 aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTc                           >  1:863613/1‑91 (MQ=255)

                                                                 aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTc                           >  1:396454/1‑91 (MQ=255)

                                                                 aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTc                           <  2:719740/91‑1 (MQ=255)

                                                                 aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTc                           >  1:3221732/1‑91 (MQ=255)

                                                                   tCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCg                         >  2:1306701/1‑91 (MQ=255)

                                                                   tCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCg                         >  1:2482936/1‑91 (MQ=255)

                                                                   tCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCg                         <  2:3030782/91‑1 (MQ=255)

                                                                   tCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATAGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCg                         >  1:3081509/1‑91 (MQ=255)

                                                                     aTGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGcc                       >  1:292777/1‑91 (MQ=255)

                                                                      tGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTTTCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTACGCCa                      >  2:3568284/1‑91 (MQ=255)

                                                                       gCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAg                     >  1:2700944/1‑91 (MQ=255)

                                                                         aTAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCt                   <  1:1633739/91‑1 (MQ=255)

                                                                          tAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCtt                  <  2:746885/91‑1 (MQ=255)

                                                                           aaGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTc                 <  1:2707708/91‑1 (MQ=255)

                                                                            aGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCt                <  2:3828402/91‑1 (MQ=255)

                                                                              aaaTACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCtgt              >  1:1916024/1‑91 (MQ=255)

                                                                                  aCTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCTACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTg          >  2:1667199/1‑91 (MQ=255)

                                                                                  aCTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTg          <  1:3048520/91‑1 (MQ=255)

                                                                                  aCTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTg          <  2:2709748/91‑1 (MQ=255)

                                                                                     aaTTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTgggg       >  2:3382206/1‑91 (MQ=255)

                                                                                     aaTTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTgggg       >  1:1193854/1‑91 (MQ=255)

                                                                                      aTTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGc      >  2:3456039/1‑91 (MQ=255)

                                                                                         tCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGcccc   <  1:2960104/91‑1 (MQ=255)

                                                                                         tCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGcccc   <  1:3071615/91‑1 (MQ=255)

                                                                                         tCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGcccc   <  1:746521/91‑1 (MQ=255)

                                                                                         tCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGcccc   <  2:1046848/91‑1 (MQ=255)

                                                                                          cTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCg  <  2:1182635/91‑1 (MQ=255)

ATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCG  >  USA300TCH1516_ALE/848232‑848412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.