| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 802131 = | 131 (0.690) | 9 (0.050) | 7/138 | NT | 6.7% | intergenic (+372/+252) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | 802180 = | 139 (0.850) | intergenic (+421/+203) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
ATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/802231‑802131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCT > USA300TCH1516_ALE/802180‑802268 ATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATT > 2:3682629/1‑91ATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATT > 1:2136390/1‑91ATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATT < 2:1982850/91‑1ATGATGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATT < 1:3006325/91‑1 TGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTC < 1:1969420/91‑1 TGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTC < 1:2932209/91‑1 TGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTC < 1:1968189/91‑1 TGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTC < 1:953005/91‑1 GTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCA > 1:1381304/1‑91 GTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCA < 2:1440871/91‑1 TTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCAT < 2:120657/91‑1 TTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCAT < 1:723655/91‑1 TGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATC < 2:1412607/91‑1 TGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATC > 2:2788115/1‑91 GTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:850258/91‑1 GTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:849226/91‑1 GTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:2476990/91‑1 GTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:358137/91‑1 GTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC > 1:2845948/1‑91 GTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC > 1:2846006/1‑91 TATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCG > 1:3578341/1‑91 TATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCG < 2:725933/91‑1 TATTTTAAACCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACACTCATCCG > 1:1947589/1‑91 TTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT < 1:1164786/91‑1 TTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT > 1:721161/1‑91 TTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT > 2:913090/1‑91 TTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT > 2:737051/1‑91 TTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT < 2:595497/91‑1 TTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT > 1:1209755/1‑91 TTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT > 2:223904/1‑91 TTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT < 1:1807185/91‑1 TTAAATCATAGTGGTTTATGCGTCTTTTTCAGATGCTATAAAAAATCGGATGGCGTGTAATCTGCCATAGATGAACACAGTCATCCGATTT < 2:344209/91‑1 TTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT < 1:1845212/91‑1 TTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT < 1:2377088/91‑1 AGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT > 1:1066210/1‑80 AGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT < 2:1066210/80‑1 TCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACG > 1:1874453/1‑91 AAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATT > 1:2339235/1‑91 AAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTT > 1:1749669/1‑91 AAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTA > 1:2578198/1‑91 ATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAA > 2:3003761/1‑91 ATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAA > 2:2976946/1‑91 ATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAA > 2:701759/1‑91 CGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATA > 1:3829655/1‑91 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAA > 1:2790865/1‑91 TCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAAT < 2:3302761/91‑1 TCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAAT < 2:1156048/91‑1 CATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGTCAAAATT > 1:1931002/1‑91 CATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATT > 1:937057/1‑91 ATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTA < 1:913406/91‑1 TCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTAT > 2:1797133/1‑91 CCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATA < 1:93729/91‑1 CCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATA < 1:93646/91‑1 CGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATAT < 1:394117/91‑1 CGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATAT < 1:1603449/91‑1 CGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATAT < 1:394218/91‑1 CGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCC‑AAATTATATG > 1:3507089/1‑91 GATTTTTTGTAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATG > 2:2025831/1‑91 GATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATG > 1:626504/1‑91 GATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATG < 2:2565862/91‑1 GATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATG < 2:230195/91‑1 GATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATG < 2:2024377/91‑1 GATTTTTTATAGAATTTGAAAAAGACCCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATG < 2:855496/91‑1 ATTTTTTATAGAATTTGAAAAAGACGCATAAATCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGT < 1:3309753/91‑1 ATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCGAAAATTATATGT < 1:2972166/91‑1 ATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGT < 1:301589/91‑1 ATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGT < 1:2043843/91‑1 TTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCT > 2:691130/1‑91 ATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/802231‑802131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCT > USA300TCH1516_ALE/802180‑802268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |