| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 802131 = | 131 (0.690) | 9 (0.050) | 7/138 | NT | 6.7% | intergenic (+372/+252) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | 802180 = | 139 (0.850) | intergenic (+421/+203) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
Only 100 of 237 total aligned reads displayed.
CGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGT > USA300TCH1516_ALE/802091‑802270 | cGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt > 1:2879680/1‑91 (MQ=255)aaatcatagtggtttatgcgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt > 1:1749669‑M1/41‑91 (MQ=255) gTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttttt < 1:2665324/91‑1 (MQ=255) tCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTta < 1:1595954/91‑1 (MQ=255) cccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtat > 1:1156048/1‑91 (MQ=255) ccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtata > 2:515717/1‑91 (MQ=255) gCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGa < 1:364843/91‑1 (MQ=255) ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAtt > 2:1381304/1‑91 (MQ=255) cAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTg < 1:705791/91‑1 (MQ=255) tAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaa < 1:2437381/91‑1 (MQ=255) aaTGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaaaa > 1:3133068/1‑91 (MQ=255) tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGa < 2:1156741/91‑1 (MQ=255) tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGa < 1:2257949/91‑1 (MQ=255) cgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGa > 1:1874453‑M1/23‑91 (MQ=255) tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGc > 2:416468/1‑91 (MQ=255) aGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCa > 2:3509515/1‑91 (MQ=255) aGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCa > 1:2533604/1‑91 (MQ=255) gTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCAt > 2:2700584/1‑91 (MQ=255) tttATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATa > 1:1094686/1‑91 (MQ=255) aTCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAc < 1:3585045/91‑1 (MQ=255) aTCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAc < 1:481447/91‑1 (MQ=255) tCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAcc > 2:2324026/1‑91 (MQ=255) tattattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt < 2:3326939/91‑1 (MQ=255) tattattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt > 2:3726473/1‑91 (MQ=255) tattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATg > 1:1539483/1‑91 (MQ=255) ttatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAt < 1:388205/91‑1 (MQ=255) tataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt < 2:2757902/91‑1 (MQ=255) tataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt > 1:993836/1‑91 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAttt > 1:2042785/1‑91 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAttt < 1:2330141/91‑1 (MQ=255) taAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTa > 1:2433493/1‑91 (MQ=255) taAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTa > 2:467896/1‑91 (MQ=255) taAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTa > 2:1736990/1‑91 (MQ=255) aaaatcggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTa > 1:2578198‑M2/51‑91 (MQ=255) AAATCGGATGACTGTGTTCATCTATGGCAGATTACACGCCATCCGATTTTTTATAGCATCTGAAAAAGACGCATAAACCACTATGATTTaa < 2:344209‑M1/91‑1 (MQ=255) AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa > 2:737051‑M1/1‑91 (MQ=255) AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa > 2:223904‑M1/1‑91 (MQ=255) AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa > 1:1209755‑M1/1‑91 (MQ=255) atcggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaaa > 2:701759‑M2/48‑91 (MQ=255) atcggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaaa > 2:2976946‑M2/48‑91 (MQ=255) ATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt > 1:1066210‑M1/1‑80 (MQ=255) ATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaaa > 1:721161‑M1/1‑91 (MQ=255) cggatgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATa > 1:3829655‑M2/46‑91 (MQ=255) CGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATa > 1:3578341‑M1/1‑91 (MQ=255) GGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac < 1:2476990‑M1/91‑1 (MQ=255) GGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac < 1:850258‑M1/91‑1 (MQ=255) GGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac > 1:2846006‑M1/1‑91 (MQ=255) atgacgtgtaatctgccatagattaacacattcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaa > 1:2790865‑M2/43‑91 (MQ=255) ATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaa < 1:723655‑M1/91‑1 (MQ=255) TGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaac > 1:1381304‑M1/1‑91 (MQ=255) GAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaaca < 1:1968189‑M1/91‑1 (MQ=255) AATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACAt > 2:3682629‑M1/1‑91 (MQ=255) AATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACAt < 2:1982850‑M1/91‑1 (MQ=255) aTGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatc < 1:2107469/91‑1 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATATACCACTATGATTTAAAATACAACatcaatc < 2:2849450/91‑1 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc > 1:1410387/1‑91 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc > 2:544964/1‑91 (MQ=255) ttAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatca > 2:2922106/1‑91 (MQ=255) ttAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatca < 2:650525/91‑1 (MQ=255) aaTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAtt > 1:3399215/1‑91 (MQ=255) aaTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAtt > 1:2341997/1‑91 (MQ=255) aTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt < 2:161547/91‑1 (MQ=255) aTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt > 2:1013072/1‑91 (MQ=255) tCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAtttt > 2:1548278/1‑91 (MQ=255) tATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg < 1:2950507/91‑1 (MQ=255) tATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg > 2:2087247/1‑91 (MQ=255) tGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTg > 1:2152806/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg > 2:2879268/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg > 2:2470818/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg < 2:2797680/91‑1 (MQ=255) aGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCAt > 2:2538103/1‑91 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATg < 1:595497/91‑1 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATg < 2:2315581/91‑1 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATg > 2:1106725/1‑91 (MQ=255) gATTACACGTCATCCGATCTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTCAGCGGCATg > 1:1755200/1‑91 (MQ=255) aTTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgc > 2:1242603/1‑91 (MQ=255) aTTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgc > 2:571265/1‑91 (MQ=255) aTTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgc < 2:1115197/91‑1 (MQ=255) ttACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg > 1:1427980/1‑91 (MQ=255) ttACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg < 2:310173/91‑1 (MQ=255) ttACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg < 2:3258761/91‑1 (MQ=255) tACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcgc < 2:1250200/91‑1 (MQ=255) acacGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGcc > 1:526402/1‑91 (MQ=255) acGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaa > 1:1107405/1‑91 (MQ=255) cGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaaa < 1:2423976/91‑1 (MQ=255) tcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAAt < 2:3302761‑M2/80‑1 (MQ=255) catccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGTCAAAAtt > 1:1931002‑M2/11‑91 (MQ=255) catccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAAtt > 1:937057‑M2/11‑91 (MQ=255) atccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATta < 1:913406‑M2/82‑1 (MQ=255) tccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATtat > 2:1797133‑M2/9‑91 (MQ=255) cgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCC‑AAATTATATg > 1:3507089‑M2/7‑91 (MQ=255) gatttTTTGTAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATg > 2:2025831‑M2/6‑91 (MQ=255) gatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATg < 2:2565862‑M2/86‑1 (MQ=255) atttTTTATAGAATTTGAAAAAGACGCATAAATCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGt < 1:3309753‑M2/87‑1 (MQ=255) atttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCGAAAATTATATGt < 1:2972166‑M2/87‑1 (MQ=255) tttATAGAATTTGAAAAAGACGCATAAACCACTGTGATTTAAAATACAACATCAATCATTTTAGt < 2:2946802/65‑1 (MQ=255) tttATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGt > 1:2946802/1‑65 (MQ=255) tttATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGt < 1:1262936/91‑1 (MQ=255) tttATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGt < 1:1790764/91‑1 (MQ=255) tttATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGt > 1:3479570/1‑91 (MQ=255) | CGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGT > USA300TCH1516_ALE/802091‑802270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |