| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 811545 = | 153 (0.800) | 11 (0.060) +CAT |
9/154 | NT | 7.4% | intergenic (+387/‑279) | nrdF/fecD_1 | Ribonucleoside‑diphosphate reductase subunit beta/Fe(3+) dicitrate transport system permease protein FecD |
| ? | USA300TCH1516_ALE | = 2665005 | 134 (0.700) | intergenic (+240/+198) | pitA_2/USA300TCH1516_02535 | L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein | |||||
TTCTTA‑ACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/811606‑811545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATACT‑TTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGT < USA300TCH1516_ALE/2665005‑2664921 ||| TTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATT < 2:2917650/91‑1 ttatACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGT < 2:1103114/87‑1 tatACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGTA < 2:275822/88‑1 atACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGTAT < 1:285522/89‑1 ACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGTATTT < 1:3098668/91‑1 CATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGTATTTC < 1:1464682/91‑1 CATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGTATTTC < 1:2206138/91‑1 ATTAGCCGCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACT‑TTTTCTATAGAAATTAGTATGTCT < 2:3439228/91‑1 aCAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACT‑TTTTCTTTAGAAATTAGTATTTCTTATACAT < 1:253972/90‑1 CATGAGTAAAACTCATGTATAAGAAATACT‑TTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTCTTAAG < 1:19578/91‑1 TAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑AAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACA > 1:1271228/1‑91 ATGCATAAGAAATACTCATTTCTATAGAAA‑AAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTaa > 1:495418/1‑89 ATGCATAAGAAATACTAATTTCTATAGAAA‑AAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGT > 1:2273618/1‑91 ||| TTCTTA‑ACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/811606‑811545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATACT‑TTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGT < USA300TCH1516_ALE/2665005‑2664921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |