BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	811545 =	153 (0.800)	11 (0.060) +CAT	9/154	NT	7.4%	intergenic (+387/‑279)	nrdF/fecD_1	Ribonucleoside‑diphosphate reductase subunit beta/Fe(3+) dicitrate transport system permease protein FecD
*	?	USA300TCH1516_ALE	= 2665005	134 (0.700)	11 (0.060) +CAT	9/154	NT	7.4%	intergenic (+240/+198)	pitA_2/USA300TCH1516_02535	L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein

Only 100 of 194 total aligned reads displayed.

AGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTT  >  USA300TCH1516_ALE/811456‑811635

aGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCcaca                                                                                           <  1:1174873/91‑1 (MQ=255)

 ggCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACAt                                                                                          <  2:909238/91‑1 (MQ=255)

 ggCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACAt                                                                                          <  1:662446/91‑1 (MQ=255)

  gCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATg                                                                                         <  2:323943/91‑1 (MQ=255)

  gCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATg                                                                                         <  2:323767/91‑1 (MQ=255)

   cGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGa                                                                                        <  1:495492/91‑1 (MQ=255)

   cGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGa                                                                                        <  1:3754965/91‑1 (MQ=255)

     gAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGTCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGt                                                                                      >  1:255728/1‑91 (MQ=255)

      aaaGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGtt                                                                                     <  2:1428537/91‑1 (MQ=255)

       aaGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGttt                                                                                    >  2:2060544/1‑91 (MQ=255)

       aaGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGtaa                                                                                    <  1:1123380/91‑3 (MQ=255)

        aGTCAGCTAACAATATTGTGCAAGTGCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGtaaa                                                                                   <  1:3782068/91‑4 (MQ=255)

         tgtgtacttaaaaatatgaatacatgagtaaaactcatgcataagaaatactttttctatagaaattagtatttcttatgCATGAGTTTTa                                                                                  >  1:1271228‑M1/81‑91 (MQ=255)

           cAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACt                                                                                <  2:697736/91‑1 (MQ=255)

           cAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACt                                                                                <  2:1498964/91‑1 (MQ=255)

           cAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACt                                                                                <  2:2563275/91‑1 (MQ=255)

                   aaTATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTAtt                                                                        <  1:3038736/91‑1 (MQ=255)

                     tatTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTcc                                                                      <  2:3042172/91‑1 (MQ=255)

                     tatTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTcc                                                                      >  1:408948/1‑91 (MQ=255)

                     tatTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTcc                                                                      <  1:1008904/91‑1 (MQ=255)

                     tatTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTcc                                                                      <  1:2272269/91‑1 (MQ=255)

                     tatTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTcc                                                                      <  2:3775258/91‑1 (MQ=255)

                      atTGTGCAAGTTCGGGCTGGGCCCCAACAGAAAGAAAGACTTTTTCCTTTAGAAATTATCGCTTCCGCATGAGTTTTACTCATGTATTCCt                                                                     <  2:487340/91‑1 (MQ=25)

                      atTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCt                                                                     >  2:2893307/1‑91 (MQ=255)

                      atTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCt                                                                     <  1:3301404/91‑1 (MQ=255)

                      atTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCt                                                                     <  2:3849308/91‑1 (MQ=255)

                      atTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCt                                                                     >  2:1238836/1‑91 (MQ=255)

                      atTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCt                                                                     >  2:1137612/1‑91 (MQ=255)

                         gtgCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTAtt                                                                  >  2:3432636/1‑91 (MQ=255)

                         gtgCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTAtt                                                                  >  2:3681510/1‑91 (MQ=255)

                         gtgCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTAtt                                                                  >  2:3432148/1‑91 (MQ=255)

                           gCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTAtttt                                                                <  1:3440729/91‑1 (MQ=255)

                            cAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTAttttt                                                               <  1:1786156/91‑1 (MQ=255)

                              aGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTaa                                                             >  1:352977/1‑91 (MQ=255)

                              aGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTaa                                                             <  2:691002/91‑1 (MQ=255)

                              aGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTaa                                                             >  2:782465/1‑91 (MQ=255)

                               gTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAg                                                            <  2:1306520/91‑1 (MQ=255)

                                 tCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTa                                                          <  1:3718267/91‑1 (MQ=255)

                                  cgggcgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTac                                                         >  1:3504108/1‑91 (MQ=255)

                                     gcgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTAcaca                                                      >  1:106393/1‑91 (MQ=255)

                                     gcgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTAcaca                                                      >  1:3834520/1‑91 (MQ=255)

                                       ggggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACAtt                                                    <  1:840953/91‑1 (MQ=255)

                                       ggggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACAtt                                                    <  1:3218822/91‑1 (MQ=255)

                                       ggggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACAtt                                                    <  2:652319/91‑1 (MQ=255)

                                        gggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTa                                                   <  2:2810536/91‑1 (MQ=255)

                                        gggCCCCAACATAAAGAAAAACTTTTCCCTTTAGAAATTATCACTTCCACATAAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTa                                                   >  2:2212036/1‑91 (MQ=255)

                                         ggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAg                                                  <  1:62548/91‑1 (MQ=255)

                                         ggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAg                                                  >  2:2003205/1‑91 (MQ=255)

                                          ctcatgtataagaaatactaatttctaaagaaaaagtatttcttataCATGAGTTTTACTCATGTATTCCTATTCTTAAGTGCACATTAGc                                                 <  1:2011164‑M1/44‑1 (MQ=255)

                                            cccAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGcct                                               <  2:1008642/91‑3 (MQ=255)

                                             ccAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGcctc                                              <  1:1284679/91‑4 (MQ=255)

                                             ccAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGa                                              >  2:571170/1‑91 (MQ=255)

                                             atgtataagaaatactaatttctaaagaaaaagtatttcttataCATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCtgt                                              <  1:253972‑M1/47‑2 (MQ=255)

                                             atgtataagaaatactaatttctaaagaaaaagtatttcttataCATGAGTTTTACTCATGTATTCCTATTCTTAAGTGCACATtagcagc                                              <  2:3084559‑M1/47‑4 (MQ=255)

                                              tgtataagaaatactaatttctaaagaaacagtatttcttataCATGAGTTTTACTAATGTATTACTATTCTTAAGTGCACATTAGCagag                                             <  1:3501390‑M1/48‑1 (MQ=255)

                                              cAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGcctca                                             >  1:2237747/1‑87 (MQ=255)

                                               aaCATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAgg                                            >  2:3063708/1‑91 (MQ=255)

                                                tataagaaatactaatttctaaagaaaaagtatttcttataCATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTagctgtgtt                                           <  2:2362339‑M1/50‑5 (MQ=255)

                                                aCATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACCCATTAGCTGAGGc                                           >  2:3804147/1‑91 (MQ=255)

                                                   tAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTaa                                        >  1:3139931/1‑91 (MQ=255)

                                                    agacatactaatttctatagaaaaagtatttcttatgCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGCGGCTAAt                                       <  2:3439228‑M1/54‑1 (MQ=255)

                                                     gaaatactaatttctatagaaaaagtatttcttatgCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATg                                      <  1:1464682‑M1/55‑1 (MQ=255)

                                                      aaatactaatttctaaagaaaaagtatttcttatgCATGAGTTGCACTCATGCATTCCTATTTTTAAGTACACAATAGCTGTGGCTAAtga                                     <  2:1013956‑M1/56‑2 (MQ=255)

                                                      aGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGt                                     <  2:966635/91‑1 (MQ=255)

                                                        atactaatttctatagaaaaagtatttcttatgCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAAtgtat                                   <  1:285522‑M1/58‑3 (MQ=255)

                                                           aaCTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGa                                <  2:1098976/91‑1 (MQ=255)

                                                              tttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAAcc                             >  1:1191298/1‑91 (MQ=255)

                                                              tttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAAcc                             >  2:2788412/1‑91 (MQ=255)

                                                              tttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAAcc                             <  1:1926947/91‑1 (MQ=255)

                                                               ttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCa                            <  2:2108146/91‑1 (MQ=255)

                                                               ttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCa                            <  1:3432390/91‑1 (MQ=255)

                                                               ttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCa                            <  2:3644794/91‑1 (MQ=255)

                                                               ttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCa                            >  2:1675293/1‑91 (MQ=255)

                                                               ttttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCa                            <  2:1481619/91‑1 (MQ=255)

                                                                tttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCac                           <  1:1218778/91‑1 (MQ=255)

                                                                 ttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCact                          >  2:2703365/1‑91 (MQ=255)

                                                                  tCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCacta                         <  2:3013669/91‑1 (MQ=255)

                                                                  tCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCacta                         <  1:2961249/91‑1 (MQ=255)

                                                                   ccTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCactac                        <  1:3251979/91‑1 (MQ=255)

                                                                    cTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCactact                       <  2:3565590/91‑1 (MQ=255)

                                                                     tttAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACtt                      >  1:3671372/1‑91 (MQ=255)

                                                                      ttAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTa                     <  1:3030229/91‑1 (MQ=255)

                                                                         gAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTaatc                  <  1:1965906/91‑1 (MQ=255)

                                                                           aaTTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTaatcaa                >  2:3756869/1‑91 (MQ=255)

                                                                              tATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAatcaatca             >  2:3170514/1‑91 (MQ=255)

                                                                              tATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAatcaatca             >  1:3589468/1‑91 (MQ=255)

                                                                                tCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCAtt           <  2:1835511/91‑1 (MQ=255)

                                                                                 cACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATta          >  2:160768/1‑91 (MQ=255)

                                                                                 cACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATta          >  1:169884/1‑91 (MQ=255)

                                                                                 cACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATta          >  2:2629254/1‑91 (MQ=255)

                                                                                  aCTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtag         <  2:2440926/91‑1 (MQ=255)

                                                                                  aCTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtag         <  1:2793458/91‑1 (MQ=255)

                                                                                  aCTTCCACATGAGTTTCACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtag         <  2:3704378/91‑1 (MQ=255)

                                                                                   cTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtagt        <  2:3410283/91‑1 (MQ=255)

                                                                                    ttCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtagta       >  2:2257067/1‑91 (MQ=255)

                                                                                    ttCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtagta       >  2:2573724/1‑91 (MQ=255)

                                                                                       cacaTGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtt    <  2:1652208/91‑1 (MQ=255)

                                                                                       cacaTGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtt    >  1:36680/1‑91 (MQ=255)

                                                                                         caTGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtttt  <  1:3360209/91‑1 (MQ=255)

                                                                                         caTGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtttt  >  2:3588578/1‑91 (MQ=255)

AGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTT  >  USA300TCH1516_ALE/811456‑811635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.