| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 811545 = | 153 (0.800) | 11 (0.060) +CAT |
9/154 | NT | 7.4% | intergenic (+387/‑279) | nrdF/fecD_1 | Ribonucleoside‑diphosphate reductase subunit beta/Fe(3+) dicitrate transport system permease protein FecD |
| ? | USA300TCH1516_ALE | = 2665005 | 134 (0.700) | intergenic (+240/+198) | pitA_2/USA300TCH1516_02535 | L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein | |||||
Only 100 of 173 total aligned reads displayed.
TTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGC > USA300TCH1516_ALE/2664915‑2665094 | ttAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGACA‑A‑AGTATTTCtt < 1:2989518/91‑1 (MQ=21)ttAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCtt > 1:3681412/1‑91 (MQ=34) aGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTa > 1:913926/1‑91 (MQ=34) aGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTa < 1:3750954/91‑1 (MQ=34) ccACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtc > 2:2447781/1‑91 (MQ=33) ccACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtc < 2:140414/91‑1 (MQ=34) tgtggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcg > 2:3595227/5‑91 (MQ=21) gtggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcgt > 2:1476181/4‑91 (MQ=21) acaGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTT‑TTTCTATAGAAA‑TTAGTATTTCTTatgcat > 1:2273618‑M2/1‑85 (MQ=255) acaGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcgt > 1:855503/1‑91 (MQ=34) taGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcgtc < 2:3854168/90‑1 (MQ=18) caGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcgtc < 1:3782968/91‑1 (MQ=34) aGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcgtcg > 2:975148/1‑91 (MQ=34) aGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTAtcgtcg < 1:3126254/91‑1 (MQ=34) tAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTcc < 1:950279/91‑1 (MQ=34) tAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTcc > 2:2254926/1‑91 (MQ=34) aaTGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTccc > 2:1584108/1‑91 (MQ=34) aaTGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTccc < 1:2503348/91‑1 (MQ=34) aaTGTGTACTTAAAAATAGGAATACATGACTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATAGTCGTccc > 2:3377408/1‑91 (MQ=255) aTGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCa > 2:2912939/1‑91 (MQ=34) aTGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCa > 1:2746087/1‑91 (MQ=34) tgtgTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTT‑TTTCTATAGAAA‑TTAGTATTTCTTatgcatgagtttta > 1:1271228‑M2/1‑77 (MQ=255) tgtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCAccc > 2:1201364/1‑91 (MQ=33) gtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCAcccc < 1:2174545/91‑1 (MQ=34) gtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCAcccc > 2:2470838/1‑91 (MQ=34) aCTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCaa > 2:299420/1‑91 (MQ=33) cTTAAGAATAGGAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTAAAGAAA‑A‑AGTATTTCTTatacatgagttttactcatg < 1:19578‑M2/91‑21 (MQ=255) cTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAAc > 1:740865/1‑91 (MQ=34) ttAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACt > 1:490257/1‑91 (MQ=34) tAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTc > 2:3719754/1‑91 (MQ=35) aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGc < 2:2496701/91‑1 (MQ=37) aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGca > 2:1059139/1‑91 (MQ=38) aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGcac > 2:2747376/1‑91 (MQ=39) aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGcac < 2:2777934/91‑1 (MQ=40) tAGGAATACATGAGTAAAGCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACat < 2:3354643/91‑1 (MQ=255) tAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACat > 1:3710017/1‑91 (MQ=255) aGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACatt > 1:1014669/1‑91 (MQ=40) ggAATACATGAGTAAAACTCATGTATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACatta > 2:802153/1‑91 (MQ=255) ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACatta > 2:3083665/1‑91 (MQ=40) cATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAC‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTaa < 1:3876107/91‑1 (MQ=255) tGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGc < 1:2612885/91‑1 (MQ=255) aGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTg < 2:2183689/91‑1 (MQ=255) aGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTg < 1:3461413/91‑1 (MQ=255) aGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTg < 1:3461395/91‑1 (MQ=255) aGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTg > 2:504522/1‑91 (MQ=255) aGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTg < 2:2337513/91‑1 (MQ=255) gTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGa < 1:539740/91‑1 (MQ=255) ttttaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAc > 2:2886075/5‑91 (MQ=255) aaaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAcga < 1:3117486/91‑3 (MQ=255) aaaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAcga < 1:745297/91‑3 (MQ=255) aaaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtt < 1:236621/91‑1 (MQ=255) aaaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtt < 1:2169921/91‑1 (MQ=255) aaaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtt < 1:236940/91‑1 (MQ=255) aaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAcgaa < 2:3667546/91‑4 (MQ=255) aaCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAcgaa < 2:2700656/91‑4 (MQ=255) aaCTCATGCATAAGAAATACTAATTTCAATAGAAA‑A‑AGTATTTCTTTAACGTCGTGCCACCCCAACTCGCACATTATTGTAAGCTGACttt > 1:2734501/1‑91 (MQ=255) aCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAcgaaa < 2:3459838/91‑5 (MQ=255) aCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtttt < 1:1700799/91‑1 (MQ=255) aCTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtttt > 1:2172705/1‑91 (MQ=255) cATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGt > 1:3517939/1‑91 (MQ=255) aTGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTc > 2:1162653/1‑91 (MQ=255) tGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCa > 1:679330/1‑91 (MQ=255) gCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAg > 1:408805/1‑91 (MQ=255) cATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGc < 1:1236863/91‑1 (MQ=255) aaGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTc < 2:1951592/91‑1 (MQ=255) aaGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTc < 2:2623817/91‑1 (MQ=255) aaGAAATACT‑TTTTCTATAGAAATT‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTc > 1:1371296/1‑91 (MQ=17) gAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTatgcatgagttttactcatgtattcctatttttaagtacacattagctgtggctaatg < 1:2206138‑M2/91‑59 (MQ=255) aaaTACTAATTTCTATAGAAA‑A‑AGTATTTCTTatgcatgagttttactcatgtattcctatttttaagtacacattagctgtggctaatgt < 1:3098668‑M2/91‑60 (MQ=255) aaaTACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCtgt < 1:3417706/91‑1 (MQ=255) aTACTAATTTCTATAGAAA‑A‑AGTATTTCTTatgcatgagttttactcatgtattcatatttttaagtacacattagctgtggctaatgtat < 1:285522‑M2/91‑62 (MQ=255) cTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTgg < 1:504522/91‑1 (MQ=255) aaTTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTgggg < 2:1762774/91‑1 (MQ=255) aTTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGc > 1:869137/1‑91 (MQ=255) aTTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGc > 2:1489133/1‑91 (MQ=255) ttCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGccc < 1:1442029/91‑1 (MQ=255) ttCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGccc < 1:2899042/91‑1 (MQ=255) taGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCaaaaa < 2:3866844/91‑1 (MQ=255) gAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc > 1:2067327/1‑91 (MQ=255) gAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc > 1:363936/1‑91 (MQ=255) gAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc > 1:1758939/1‑91 (MQ=255) gAAA‑A‑AGTATTTCTTTATCGTCGGCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc < 2:1290255/91‑1 (MQ=255) aa‑a‑aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCa > 2:1025030/1‑64 (MQ=255) aa‑a‑aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCa < 1:1025030/64‑1 (MQ=255) a‑a‑aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTg > 2:17420/1‑91 (MQ=255) a‑aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGt < 1:1148211/91‑1 (MQ=255) a‑aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGt < 2:2003562/91‑1 (MQ=255) aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGtt > 2:924242/1‑91 (MQ=255) aGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGtt > 2:610672/1‑91 (MQ=255) tATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTAc > 2:2728847/1‑91 (MQ=255) tttCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACaa > 2:2597582/1‑91 (MQ=255) tttCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACaa > 1:2581285/1‑91 (MQ=255) ttCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAg < 1:2832449/91‑1 (MQ=255) ttCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAg > 2:129459/1‑91 (MQ=255) tCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgc < 1:1550924/91‑1 (MQ=255) cTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcg > 2:766216/1‑91 (MQ=255) cTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcg < 1:893432/91‑1 (MQ=255) tttATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc < 1:2560845/91‑1 (MQ=255) tttATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc < 1:628199/91‑1 (MQ=255) tttATCGTCGTCCCACCCCAACTCACACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc < 2:3614428/91‑1 (MQ=255) | TTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAA‑A‑AGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGC > USA300TCH1516_ALE/2664915‑2665094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |