| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 842619 = | 189 (0.990) | 15 (0.090) | 13/144 | NT | 8.6% | intergenic (+5/‑657) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| ? | USA300TCH1516_ALE | 842662 = | 147 (0.860) | intergenic (+48/‑614) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase | |||||
TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/842716‑842619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC > USA300TCH1516_ALE/842662‑842751 TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTGTAACATCCTTCAC > 2:1371136/1‑91TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC > 1:1820442/1‑91TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC > 1:472256/1‑91TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC > 1:3815691/1‑91 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT < 1:1569592/91‑1 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT < 2:1463411/91‑1 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT < 2:1463400/91‑1 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT > 1:2654319/1‑91 ACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 2:74543/91‑1 ACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT > 2:2727859/1‑91 ACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 2:2679619/91‑1 ACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 1:3151505/91‑1 ATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCT < 1:790709/91‑1 ATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCT < 1:1835251/91‑1 TAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTT < 1:3803990/91‑1 AATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTT > 1:2981207/1‑91 AATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTT < 2:1658586/91‑1 AATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTT > 1:1737210/1‑91 AATTCTTTTTACACATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTT > 1:2981130/1‑91 ATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT < 2:2930304/91‑1 ATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT > 2:2105043/1‑91 ATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT < 2:1992675/91‑1 ATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT < 2:1992389/91‑1 CTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGC > 1:2210515/1‑91 AAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGT > 2:806242/1‑91 AATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTCCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTA > 2:3196061/1‑91 ATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTCAGTAATGAATAGTATAAAGAAAAGATGCGTAA > 1:3319052/1‑91 TTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAA > 1:1658644/1‑91 TAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAA > 1:127613/1‑91 TAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGA > 2:916647/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTA > 1:351563/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTA > 1:468430/1‑91 CGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAA > 2:2977605/1‑91 GAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAG > 2:1520916/1‑91 AGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAT > 2:3056818/1‑91 ATAAATTTATAACATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGG > 2:2629023/1‑91 AAATTTATAACATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGT > 1:3610502/1‑91 AAATTTATAACATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGT > 1:3845731/1‑91 TTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACA < 1:1753751/91‑1 TCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACAT < 1:2664913/91‑1 TCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACAT < 1:2664372/91‑1 TCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACAT < 1:2664334/91‑1 CTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATA > 1:688394/1‑91 CTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAAAAGAGAAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATA < 2:831050/91‑1 TTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAA > 2:2618364/1‑91 TTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAA > 2:2618390/1‑91 TTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAA < 1:1626016/91‑1 TTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAA > 2:15580/1‑91 TTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAA < 1:1625990/91‑1 TTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAA > 1:872635/1‑91 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA < 1:575149/91‑1 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA > 1:3187967/1‑91 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA > 2:3273101/1‑91 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA < 2:357564/91‑1 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA > 2:3752873/1‑91 TTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAAT > 2:1014287/1‑91 TTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC > 2:174178/1‑91 TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/842716‑842619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC > USA300TCH1516_ALE/842662‑842751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |