BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842619 =	189 (0.990)	15 (0.090)	13/144	NT	8.6%	intergenic (+5/‑657)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	842662 =	147 (0.860)	15 (0.090)	13/144	NT	8.6%	intergenic (+48/‑614)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 236 total aligned reads displayed.

AGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCG  >  USA300TCH1516_ALE/842572‑842752

 tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                           >  2:916647‑M1/47‑91 (MQ=255)

 gaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTACAAATTTATCCTTCGCTTCTTTtta                                                                                           >  1:1371136/1‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  2:140590/1‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  1:1635987/1‑91 (MQ=255)

    ttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                                        >  1:127613‑M1/44‑91 (MQ=255)

    gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                                        >  1:2601815/1‑91 (MQ=255)

     tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                                       <  2:2444939/91‑1 (MQ=255)

      aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                                                                      <  1:3702395/91‑1 (MQ=255)

       tacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGGAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                                     >  2:3196061‑M1/41‑91 (MQ=255)

       cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                                     >  2:1316879/1‑91 (MQ=255)

        ttGAACGAGATAAACAAAATACTGAAGATAACTAAGATTAAAAGAAGTGAAGGATGTTATAAATTTAACCTTCGCTTCTATTTATTAAttt                                                                                    >  2:2959765/1‑91 (MQ=255)

        ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                                                                    >  2:833196/1‑91 (MQ=255)

        acgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                                                                    >  2:806242‑M1/40‑91 (MQ=255)

         tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                                                                   >  1:3346025/1‑91 (MQ=255)

           aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                                 <  2:1721338/91‑1 (MQ=255)

           aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                                 >  2:3675367/1‑91 (MQ=255)

           aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                                 <  1:3039351/91‑1 (MQ=255)

            aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                <  2:2832841/91‑1 (MQ=255)

            aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                <  1:2513880/91‑1 (MQ=255)

             cGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTaa                                                                               <  2:1515502/91‑1 (MQ=255)

               agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                             <  2:3783640/91‑1 (MQ=255)

                gaTAAACAAAATCCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                                                                            >  1:2967746/1‑91 (MQ=255)

                 aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                           >  1:1104599/1‑91 (MQ=255)

                    aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                                                                        >  2:2162933/1‑91 (MQ=255)

                        aaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTaga                                                                    >  2:2724093/1‑91 (MQ=255)

                         aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaa                                                                   <  2:3036447/91‑1 (MQ=255)

                           tACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaag                                                                 <  1:1415263/91‑1 (MQ=255)

                            aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                                <  1:2269473/91‑1 (MQ=255)

                             cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                               >  1:589531/1‑91 (MQ=255)

                              tGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAgaaagaaa                                                              >  1:1356754/1‑91 (MQ=255)

                               gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                             <  2:1812938/91‑1 (MQ=255)

                                aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                                                            >  2:3350052/1‑91 (MQ=255)

                                aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                                                            >  2:3530936/1‑91 (MQ=255)

                                 aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaaga                                                           >  1:3833818/1‑91 (MQ=255)

                                  gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                          >  1:514610/1‑91 (MQ=255)

                                    taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                                        <  2:2452673/91‑1 (MQ=255)

                                    taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                                        >  1:3529875/1‑91 (MQ=255)

                                    ctaaattaataaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                                        >  1:2210515‑M2/55‑91 (MQ=255)

                                     aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg                                                       >  2:1875530/1‑91 (MQ=255)

                                       ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGTGTa                                                     >  1:428391/1‑91 (MQ=255)

                                       ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTa                                                     >  1:2636640/1‑91 (MQ=255)

                                       ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTa                                                     >  1:2380189/1‑91 (MQ=255)

                                        attaataaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTCAGTAATGAATAGTATAAAGAAAAGATGCGTaa                                                    >  1:3319052‑M2/51‑91 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   >  1:127869/1‑91 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   <  2:1356754/91‑1 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   >  2:1098501/1‑91 (MQ=255)

                                             ttAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGa                                               <  2:2061478/91‑1 (MQ=255)

                                              tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              <  2:435569/91‑1 (MQ=255)

                                              tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              >  2:2789385/1‑91 (MQ=255)

                                               AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt                                             >  2:2105043‑M1/1‑91 (MQ=255)

                                               AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt                                             <  2:1992675‑M1/91‑1 (MQ=255)

                                                AAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                            >  1:1737210‑M1/1‑91 (MQ=255)

                                                  AGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTAt                                          <  1:790709‑M1/91‑1 (MQ=255)

                                                    AAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGt                                        <  2:74543‑M1/91‑1 (MQ=255)

                                                    AAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGt                                        <  2:2679619‑M1/91‑1 (MQ=255)

                                                    AAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGt                                        <  1:3151505‑M1/91‑1 (MQ=255)

                                                     AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                       <  1:1569592‑M1/91‑1 (MQ=255)

                                                     AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                       >  1:2654319‑M1/1‑91 (MQ=255)

                                                     AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                       <  2:1463400‑M1/91‑1 (MQ=255)

                                                      gcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                      >  1:351563‑M2/37‑91 (MQ=255)

                                                      GTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                      >  1:1820442‑M1/1‑91 (MQ=255)

                                                      GTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                      >  1:472256‑M1/1‑91 (MQ=255)

                                                       cgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTaa                                     >  2:2977605‑M2/36‑91 (MQ=255)

                                                         aaGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGa                                   >  2:2182886/1‑91 (MQ=255)

                                                         aaGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGa                                   >  2:33263/1‑91 (MQ=255)

                                                         aaGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGa                                   >  1:2206546/1‑91 (MQ=255)

                                                          aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                  >  1:2101547/1‑91 (MQ=255)

                                                            gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                >  2:1596507/1‑91 (MQ=255)

                                                             ataaatttataacatccttcgcttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  2:2629023‑M2/30‑91 (MQ=255)

                                                             aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  1:1705498/1‑91 (MQ=255)

                                                              tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                              <  1:2930304/91‑1 (MQ=255)

                                                              tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                              <  1:3675367/91‑1 (MQ=255)

                                                               gTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                             <  2:1033330/91‑1 (MQ=255)

                                                               gTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                             >  2:1143785/1‑91 (MQ=255)

                                                               aaatttataacatccttcgcttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                             >  1:3610502‑M2/28‑91 (MQ=255)

                                                                ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc                            <  1:833196/91‑1 (MQ=255)

                                                                ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc                            <  2:237277/91‑1 (MQ=255)

                                                                  ataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                          >  2:586731/1‑91 (MQ=255)

                                                                  ataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                          <  1:2050068/91‑1 (MQ=255)

                                                                   taAATTTCTCCTTCGCTTCTTTTTATTAATTTAGTACTGAGTAGTAGCAAGAAAAGATGCGTAAAAACAATTATGTGAAGATAGGGTCAAt                         >  2:3611987/1‑91 (MQ=255)

                                                                       tttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag                     <  1:2853825/91‑1 (MQ=255)

                                                                       tttATCCTACGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag                     <  1:2425707/91‑1 (MQ=255)

                                                                        ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  2:3833818/91‑1 (MQ=255)

                                                                        ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  1:2715842/91‑1 (MQ=255)

                                                                         tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag                   >  2:55734/1‑91 (MQ=255)

                                                                         tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag                   >  2:3556646/1‑91 (MQ=255)

                                                                           tCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                 >  2:337093/1‑91 (MQ=255)

                                                                              ttCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGtt              <  1:3257338/91‑1 (MQ=255)

                                                                               tCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTa             <  2:3235916/91‑1 (MQ=255)

                                                                               tCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTa             >  2:696005/1‑91 (MQ=255)

                                                                                cGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaa            >  2:3243219/1‑91 (MQ=255)

                                                                                    tcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACAt        <  1:2664372‑M2/85‑1 (MQ=255)

                                                                                     cttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATa       >  1:688394‑M2/6‑91 (MQ=255)

                                                                                      ttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaa      <  1:1625990‑M2/87‑1 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     <  2:357564‑M2/88‑1 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     >  2:3752873‑M2/4‑91 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     <  1:575149‑M2/88‑1 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     >  1:3187967‑M2/4‑91 (MQ=255)

                                                                                         tTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATc   >  2:174178‑M2/2‑91 (MQ=255)

                                                                                          tattaATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCg  <  2:1960954/91‑1 (MQ=255)

AGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCG  >  USA300TCH1516_ALE/842572‑842752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.