BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842619 =	189 (0.990)	15 (0.090)	13/144	NT	8.6%	intergenic (+5/‑657)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	842662 =	147 (0.860)	15 (0.090)	13/144	NT	8.6%	intergenic (+48/‑614)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 237 total aligned reads displayed.

ATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAT  >  USA300TCH1516_ALE/842531‑842709

tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                          <  2:357564‑M1/3‑1 (MQ=255)

atTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTaaa                                                                                          >  2:2545388/1‑91 (MQ=255)

 ttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaaa                                                                                         >  1:872635‑M1/88‑91 (MQ=255)

 ttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaaa                                                                                         >  2:2618390‑M1/88‑91 (MQ=255)

 ttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaaa                                                                                         <  1:1625990‑M1/4‑1 (MQ=255)

  tatgtttaactactctagattgaccctatcttaacataattcttttttctctttttttctttctactattcattactaaattaataAAaag                                                                                        <  2:831050‑M1/5‑1 (MQ=255)

  tatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataAAaag                                                                                        >  1:688394‑M1/87‑91 (MQ=255)

   gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAaaga                                                                                       >  2:3257338/1‑91 (MQ=255)

   atgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataAAaaga                                                                                       <  1:2664372‑M1/6‑1 (MQ=255)

      cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                    <  2:3146932/91‑1 (MQ=255)

      cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                    <  2:440519/91‑1 (MQ=255)

        gaaaaaGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGa                                                                                  <  2:1535120/88‑1 (MQ=255)

         aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                                 >  1:1021996/1‑91 (MQ=255)

         aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                                 >  2:2654319/1‑91 (MQ=255)

             aGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGAt                                                                             >  1:735647/1‑91 (MQ=255)

               tcatcaTATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGt                                                                           <  2:1718308/91‑1 (MQ=255)

               tcatcaTATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGt                                                                           <  1:949647/91‑1 (MQ=255)

                catcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGtt                                                                          >  1:2773917/1‑91 (MQ=255)

                 atcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTta                                                                         >  2:676288/1‑91 (MQ=255)

                  tcatATACAGGAAAGTATTTAAAAGTAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTtat                                                                        <  1:3614212/91‑1 (MQ=255)

                  tcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTtat                                                                        <  2:1511627/91‑1 (MQ=255)

                   catATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTtata                                                                       >  2:575149/1‑91 (MQ=255)

                    atatACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                      >  1:2610401/1‑91 (MQ=255)

                     tataCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACACAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTGTaaa                                                                     <  1:3069970/91‑1 (MQ=255)

                     tataCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaaa                                                                     <  2:3792592/91‑1 (MQ=255)

                        accctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGCGAAGGATGTTATAAAttt                                                                  >  1:3845731‑M1/65‑91 (MQ=255)

                        aCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAAttt                                                                  <  2:2053762/91‑1 (MQ=255)

                          aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTAt                                                                <  2:843762/91‑1 (MQ=255)

                           ggAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATc                                                               <  1:2693824/91‑1 (MQ=255)

                            gAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATcc                                                              >  2:3423756/1‑91 (MQ=255)

                             atcttaacataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCt                                                             >  2:3056818‑M1/60‑91 (MQ=255)

                             aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCt                                                             <  2:2995782/91‑1 (MQ=255)

                             aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCt                                                             <  1:3319788/91‑1 (MQ=255)

                             aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCt                                                             >  1:3702099/1‑91 (MQ=255)

                                gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                          >  1:357310/1‑91 (MQ=255)

                                gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                          <  1:1650011/91‑1 (MQ=255)

                                gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                          <  1:1362010/91‑1 (MQ=255)

                                gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                          >  2:1253809/1‑91 (MQ=255)

                                 taacataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         >  1:351563‑M1/56‑91 (MQ=255)

                                 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         >  2:1737210/1‑91 (MQ=255)

                                 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         >  2:2853825/1‑91 (MQ=255)

                                  aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                        <  2:400729/91‑1 (MQ=255)

                                  aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                        <  1:1350446/91‑1 (MQ=255)

                                   tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                       >  1:2105043/1‑91 (MQ=255)

                                   tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                       >  1:1636213/1‑91 (MQ=255)

                                     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                     >  2:2275139/1‑91 (MQ=255)

                                     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                     <  1:1432381/91‑1 (MQ=255)

                                     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                     >  2:3657565/1‑91 (MQ=255)

                                     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                     >  1:1789383/1‑91 (MQ=255)

                                      aaaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttctt                                                    <  1:1827853/91‑1 (MQ=255)

                                      aaaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttctt                                                    <  2:3229558/91‑1 (MQ=255)

                                       aaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttt                                                   <  2:113052/91‑1 (MQ=255)

                                         agaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                 >  2:2084222/1‑91 (MQ=255)

                                          tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                >  2:916647‑M1/47‑91 (MQ=255)

                                          gaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                <  2:2975181/91‑1 (MQ=255)

                                          gaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                <  1:2660575/91‑1 (MQ=255)

                                          gaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTACAAATTTATCCTTCGCTTCTTTtta                                                >  1:1371136/1‑91 (MQ=255)

                                            agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                              >  2:140590/1‑91 (MQ=255)

                                            agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                              >  1:2961253/1‑91 (MQ=255)

                                             ttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                             >  1:127613‑M1/44‑91 (MQ=255)

                                             gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                             >  1:2601815/1‑91 (MQ=255)

                                              tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                            <  2:2444939/91‑1 (MQ=255)

                                               aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                           >  2:3702395/1‑91 (MQ=255)

                                               aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                           >  1:1963177/1‑91 (MQ=255)

                                               aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                           >  2:1753751/1‑91 (MQ=255)

                                                cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                          >  2:1316879/1‑91 (MQ=255)

                                                  tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                        >  1:3346025/1‑91 (MQ=255)

                                                   gcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                       >  1:2210515‑M1/38‑91 (MQ=255)

                                                    aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                      >  2:2234142/1‑91 (MQ=255)

                                                    aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                      <  1:2112897/91‑1 (MQ=255)

                                                    aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                      <  1:3039351/91‑1 (MQ=255)

                                                     aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                     <  1:2513880/91‑1 (MQ=255)

                                                      cGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTaa                                    <  2:1401935/91‑1 (MQ=255)

                                                      cGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTaa                                    >  1:510946/1‑91 (MQ=255)

                                                        agaTAAACAAAATAATGAAGATATCTAAGATTAAAAGAAGTGAGGGATGTGATATATTTATCCTTCGCTTCTTTTTATTAATTGAGTAATg                                  <  2:3610577/91‑1 (MQ=255)

                                                           tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAt                               >  2:2775041/1‑91 (MQ=255)

                                                            aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGCTATAAATTTATCCTTCGCTTCTTTTTATTACTTTAGTAATGAAta                              >  2:3824484/1‑91 (MQ=255)

                                                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                           <  2:3768585/91‑1 (MQ=255)

                                                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                           <  2:212246/91‑1 (MQ=255)

                                                                   aTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaa                       >  2:3275939/1‑91 (MQ=255)

                                                                    tACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaag                      <  1:116753/91‑1 (MQ=255)

                                                                    tACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaag                      <  1:323637/91‑1 (MQ=255)

                                                                     aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                     <  1:2269473/91‑1 (MQ=255)

                                                                      cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                    >  1:589531/1‑91 (MQ=255)

                                                                      cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                    <  1:1507918/91‑1 (MQ=255)

                                                                        gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                  <  2:1812938/91‑1 (MQ=255)

                                                                         aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                 >  2:2790702/1‑91 (MQ=255)

                                                                          aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaaga                >  1:3833818/1‑91 (MQ=255)

                                                                          aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaaga                <  2:696279/91‑1 (MQ=255)

                                                                            ataaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg              <  2:3495165/91‑1 (MQ=255)

                                                                             taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc             >  1:3529875/1‑91 (MQ=255)

                                                                              aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg            >  2:1875530/1‑91 (MQ=255)

                                                                               aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaa                       >  1:535765/1‑79 (MQ=255)

                                                                                ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGTGTa          >  1:428391/1‑91 (MQ=255)

                                                                                ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTa          <  1:2892636/91‑1 (MQ=255)

                                                                                  aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa        <  1:2379217/91‑1 (MQ=255)

                                                                                  aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa        >  2:1098501/1‑91 (MQ=255)

                                                                                     aTTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg     <  2:77996/91‑1 (MQ=255)

                                                                                        AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt  <  2:1992675‑M1/91‑1 (MQ=255)

                                                                                        AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt  <  2:2930304‑M1/91‑1 (MQ=255)

ATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAT  >  USA300TCH1516_ALE/842531‑842709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.